/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF01-EM01-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF01-EM01-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
47718725
Paired-end alignments with a unique best hit
11837827
Pairs without alignments under any condition
30005679
Pairs that did not map uniquely
5875219
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
315419211
Methylated C's in CpG context
10028002
Methylated C's in CHG context
2595448
Methylated C's in CHH context
15258811
Methylated C's in Unknown context
341029
Unmethylated C's in CpG context
30898045
Unmethylated C's in CHG context
58865061
Unmethylated C's in CHH context
197773844
Unmethylated C's in Unknown context
1525870
Percentage methylation (CpG context)
24.5%
Percentage methylation (CHG context)
4.2%
Percentage methylation (CHH context)
7.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3036089
original top strand
CTOT
2904525
complementary to original top strand
CTOB
2881668
complementary to original bottom strand
OB
3015542
original bottom strand
Deduplication
Alignments analysed
11837824
Unique alignments
8908927
Duplicates removed
2928897
Duplicated alignments were found at 2175783 different positions
