CF08-CM05-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 289989 lines in total Total number of methylation call strings processed: 579978 Final Cytosine Methylation Report ================================= Total number of C's analysed: 5867837 Total methylated C's in CpG context: 95018 Total methylated C's in CHG context: 18261 Total methylated C's in CHH context: 373566 Total C to T conversions in CpG context: 537095 Total C to T conversions in CHG context: 898809 Total C to T conversions in CHH context: 3945088 C methylated in CpG context: 15.0% C methylated in CHG context: 2.0% C methylated in CHH context: 8.7%