/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF08-CM05-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF08-CM05-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
63057346
Paired-end alignments with a unique best hit
1698854
Pairs without alignments under any condition
60469188
Pairs that did not map uniquely
889304
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
53131425
Methylated C's in CpG context
968715
Methylated C's in CHG context
154154
Methylated C's in CHH context
2898885
Methylated C's in Unknown context
86455
Unmethylated C's in CpG context
5085353
Unmethylated C's in CHG context
8738717
Unmethylated C's in CHH context
35285601
Unmethylated C's in Unknown context
270113
Percentage methylation (CpG context)
16.0%
Percentage methylation (CHG context)
1.7%
Percentage methylation (CHH context)
7.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
435646
original top strand
CTOT
412268
complementary to original top strand
CTOB
413487
complementary to original bottom strand
OB
437453
original bottom strand
Deduplication
Alignments analysed
1698854
Unique alignments
289989
Duplicates removed
1408865
Duplicated alignments were found at 198364 different positions
