/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF08-CM04-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF08-CM04-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
54708068
Paired-end alignments with a unique best hit
1245366
Pairs without alignments under any condition
52428088
Pairs that did not map uniquely
1034614
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
24523955
Methylated C's in CpG context
385592
Methylated C's in CHG context
141132
Methylated C's in CHH context
5068731
Methylated C's in Unknown context
135348
Unmethylated C's in CpG context
1624565
Unmethylated C's in CHG context
2870352
Unmethylated C's in CHH context
14433583
Unmethylated C's in Unknown context
189745
Percentage methylation (CpG context)
19.2%
Percentage methylation (CHG context)
4.7%
Percentage methylation (CHH context)
26.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
320163
original top strand
CTOT
301141
complementary to original top strand
CTOB
304639
complementary to original bottom strand
OB
319423
original bottom strand
Deduplication
Alignments analysed
1245366
Unique alignments
685089
Duplicates removed
560277
Duplicated alignments were found at 283238 different positions
