/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF08-CM03-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF08-CM03-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
66096319
Paired-end alignments with a unique best hit
13081605
Pairs without alignments under any condition
45148855
Pairs that did not map uniquely
7865859
Genomic sequence context not extractable (edges of chromosomes)
5
Cytosine Methylation
Total C's analysed
264045006
Methylated C's in CpG context
5688845
Methylated C's in CHG context
1263257
Methylated C's in CHH context
13624378
Methylated C's in Unknown context
301984
Unmethylated C's in CpG context
23292990
Unmethylated C's in CHG context
42350005
Unmethylated C's in CHH context
177825531
Unmethylated C's in Unknown context
1586693
Percentage methylation (CpG context)
19.6%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
7.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3802759
original top strand
CTOT
2760336
complementary to original top strand
CTOB
2739636
complementary to original bottom strand
OB
3778869
original bottom strand
Deduplication
Alignments analysed
13081600
Unique alignments
8968377
Duplicates removed
4113223
Duplicated alignments were found at 2714106 different positions
