/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF07-CM02-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF07-CM02-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
60588756
Paired-end alignments with a unique best hit
7587682
Pairs without alignments under any condition
48271147
Pairs that did not map uniquely
4729927
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
176275607
Methylated C's in CpG context
3938080
Methylated C's in CHG context
607095
Methylated C's in CHH context
9685016
Methylated C's in Unknown context
289267
Unmethylated C's in CpG context
17009743
Unmethylated C's in CHG context
30870019
Unmethylated C's in CHH context
114165654
Unmethylated C's in Unknown context
961142
Percentage methylation (CpG context)
18.8%
Percentage methylation (CHG context)
1.9%
Percentage methylation (CHH context)
7.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2112107
original top strand
CTOT
1728030
complementary to original top strand
CTOB
1685694
complementary to original bottom strand
OB
2061844
original bottom strand
Deduplication
Alignments analysed
7587675
Unique alignments
4996504
Duplicates removed
2591171
Duplicated alignments were found at 1484744 different positions