CF06-CM02-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8870215 lines in total Total number of methylation call strings processed: 17740430 Final Cytosine Methylation Report ================================= Total number of C's analysed: 136935257 Total methylated C's in CpG context: 4543213 Total methylated C's in CHG context: 1383099 Total methylated C's in CHH context: 7586137 Total C to T conversions in CpG context: 13817899 Total C to T conversions in CHG context: 25699283 Total C to T conversions in CHH context: 83905626 C methylated in CpG context: 24.7% C methylated in CHG context: 5.1% C methylated in CHH context: 8.3%