/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF06-CM02-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF06-CM02-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
49423309
Paired-end alignments with a unique best hit
11862390
Pairs without alignments under any condition
31683507
Pairs that did not map uniquely
5877412
Genomic sequence context not extractable (edges of chromosomes)
8
Cytosine Methylation
Total C's analysed
331618841
Methylated C's in CpG context
11009460
Methylated C's in CHG context
3171557
Methylated C's in CHH context
17553182
Methylated C's in Unknown context
355014
Unmethylated C's in CpG context
33651900
Unmethylated C's in CHG context
62821831
Unmethylated C's in CHH context
203410911
Unmethylated C's in Unknown context
1649099
Percentage methylation (CpG context)
24.7%
Percentage methylation (CHG context)
4.8%
Percentage methylation (CHH context)
7.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3028128
original top strand
CTOT
2899793
complementary to original top strand
CTOB
2903454
complementary to original bottom strand
OB
3031007
original bottom strand
Deduplication
Alignments analysed
11862382
Unique alignments
8870215
Duplicates removed
2992167
Duplicated alignments were found at 2233561 different positions