CF06-CM01-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 16158598 lines in total Total number of methylation call strings processed: 32317196 Final Cytosine Methylation Report ================================= Total number of C's analysed: 194982120 Total methylated C's in CpG context: 5333947 Total methylated C's in CHG context: 1128807 Total methylated C's in CHH context: 8044239 Total C to T conversions in CpG context: 19188766 Total C to T conversions in CHG context: 34739930 Total C to T conversions in CHH context: 126546431 C methylated in CpG context: 21.8% C methylated in CHG context: 3.1% C methylated in CHH context: 6.0%