/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF06-CM01-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF06-CM01-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
82389335
Paired-end alignments with a unique best hit
21391013
Pairs without alignments under any condition
49144786
Pairs that did not map uniquely
11853536
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
486705678
Methylated C's in CpG context
13309555
Methylated C's in CHG context
2668182
Methylated C's in CHH context
20162803
Methylated C's in Unknown context
485728
Unmethylated C's in CpG context
47870691
Unmethylated C's in CHG context
87089171
Unmethylated C's in CHH context
315605276
Unmethylated C's in Unknown context
2841411
Percentage methylation (CpG context)
21.8%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
6.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5828753
original top strand
CTOT
4879701
complementary to original top strand
CTOB
4871977
complementary to original bottom strand
OB
5810575
original bottom strand
Deduplication
Alignments analysed
21391006
Unique alignments
16158598
Duplicates removed
5232408
Duplicated alignments were found at 3908491 different positions
