CF05-CM05-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 14502599 lines in total Total number of methylation call strings processed: 29005198 Final Cytosine Methylation Report ================================= Total number of C's analysed: 215761875 Total methylated C's in CpG context: 6373641 Total methylated C's in CHG context: 1254343 Total methylated C's in CHH context: 7390530 Total C to T conversions in CpG context: 23242439 Total C to T conversions in CHG context: 41816798 Total C to T conversions in CHH context: 135684124 C methylated in CpG context: 21.5% C methylated in CHG context: 2.9% C methylated in CHH context: 5.2%