/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF05-CM05-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF05-CM05-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
73337225
Paired-end alignments with a unique best hit
19456477
Pairs without alignments under any condition
43774341
Pairs that did not map uniquely
10106407
Genomic sequence context not extractable (edges of chromosomes)
8
Cytosine Methylation
Total C's analysed
535123220
Methylated C's in CpG context
15975122
Methylated C's in CHG context
3070671
Methylated C's in CHH context
18435234
Methylated C's in Unknown context
477737
Unmethylated C's in CpG context
57889418
Unmethylated C's in CHG context
104411314
Unmethylated C's in CHH context
335341461
Unmethylated C's in Unknown context
2603235
Percentage methylation (CpG context)
21.6%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
5.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5199710
original top strand
CTOT
4572984
complementary to original top strand
CTOB
4529764
complementary to original bottom strand
OB
5154011
original bottom strand
Deduplication
Alignments analysed
19456469
Unique alignments
14502599
Duplicates removed
4953870
Duplicated alignments were found at 3651118 different positions
