/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF05-CM02-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF05-CM02-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
53936905
Paired-end alignments with a unique best hit
19268727
Pairs without alignments under any condition
24852305
Pairs that did not map uniquely
9815873
Genomic sequence context not extractable (edges of chromosomes)
14
Cytosine Methylation
Total C's analysed
632232949
Methylated C's in CpG context
17125121
Methylated C's in CHG context
1631911
Methylated C's in CHH context
9284949
Methylated C's in Unknown context
307839
Unmethylated C's in CpG context
76864129
Unmethylated C's in CHG context
130104233
Unmethylated C's in CHH context
397222606
Unmethylated C's in Unknown context
2612278
Percentage methylation (CpG context)
18.2%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4540889
original top strand
CTOT
5088529
complementary to original top strand
CTOB
5090569
complementary to original bottom strand
OB
4548726
original bottom strand
Deduplication
Alignments analysed
19268713
Unique alignments
14427604
Duplicates removed
4841109
Duplicated alignments were found at 3614754 different positions
