/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF04-CM04-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF04-CM04-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
41746657
Paired-end alignments with a unique best hit
10918281
Pairs without alignments under any condition
25248177
Pairs that did not map uniquely
5580199
Genomic sequence context not extractable (edges of chromosomes)
5
Cytosine Methylation
Total C's analysed
285262630
Methylated C's in CpG context
7250811
Methylated C's in CHG context
1271829
Methylated C's in CHH context
8826826
Methylated C's in Unknown context
253453
Unmethylated C's in CpG context
29593044
Unmethylated C's in CHG context
53051780
Unmethylated C's in CHH context
185268340
Unmethylated C's in Unknown context
1461119
Percentage methylation (CpG context)
19.7%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
4.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3116973
original top strand
CTOT
2353642
complementary to original top strand
CTOB
2342600
complementary to original bottom strand
OB
3105061
original bottom strand
Deduplication
Alignments analysed
10918276
Unique alignments
8108328
Duplicates removed
2809948
Duplicated alignments were found at 2061434 different positions
