CF03-CM05-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 13288199 lines in total Total number of methylation call strings processed: 26576398 Final Cytosine Methylation Report ================================= Total number of C's analysed: 249748547 Total methylated C's in CpG context: 7298824 Total methylated C's in CHG context: 1548651 Total methylated C's in CHH context: 6743014 Total C to T conversions in CpG context: 29813254 Total C to T conversions in CHG context: 50953449 Total C to T conversions in CHH context: 153391355 C methylated in CpG context: 19.7% C methylated in CHG context: 2.9% C methylated in CHH context: 4.2%