/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF03-CM05-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF03-CM05-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
48978052
Paired-end alignments with a unique best hit
17211018
Pairs without alignments under any condition
23481673
Pairs that did not map uniquely
8285361
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
576011240
Methylated C's in CpG context
17042772
Methylated C's in CHG context
3377754
Methylated C's in CHH context
14831225
Methylated C's in Unknown context
430560
Unmethylated C's in CpG context
69075608
Unmethylated C's in CHG context
118450863
Unmethylated C's in CHH context
353233018
Unmethylated C's in Unknown context
2500352
Percentage methylation (CpG context)
19.8%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
4.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4221351
original top strand
CTOT
4375606
complementary to original top strand
CTOB
4385737
complementary to original bottom strand
OB
4228322
original bottom strand
Deduplication
Alignments analysed
17211016
Unique alignments
13288199
Duplicates removed
3922817
Duplicated alignments were found at 3037186 different positions