/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF03-CM04-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF03-CM04-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
57667284
Paired-end alignments with a unique best hit
25131000
Pairs without alignments under any condition
19755662
Pairs that did not map uniquely
12780622
Genomic sequence context not extractable (edges of chromosomes)
13
Cytosine Methylation
Total C's analysed
849535844
Methylated C's in CpG context
22926977
Methylated C's in CHG context
2029014
Methylated C's in CHH context
10201931
Methylated C's in Unknown context
286774
Unmethylated C's in CpG context
97913175
Unmethylated C's in CHG context
171554242
Unmethylated C's in CHH context
544910505
Unmethylated C's in Unknown context
3165460
Percentage methylation (CpG context)
19.0%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
1.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6016951
original top strand
CTOT
6529185
complementary to original top strand
CTOB
6558200
complementary to original bottom strand
OB
6026651
original bottom strand
Deduplication
Alignments analysed
25130987
Unique alignments
13915567
Duplicates removed
11215420
Duplicated alignments were found at 5950185 different positions