CF03-CM03-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 12492794 lines in total Total number of methylation call strings processed: 24985588 Final Cytosine Methylation Report ================================= Total number of C's analysed: 150062562 Total methylated C's in CpG context: 3919996 Total methylated C's in CHG context: 698297 Total methylated C's in CHH context: 5713111 Total C to T conversions in CpG context: 14815997 Total C to T conversions in CHG context: 27156955 Total C to T conversions in CHH context: 97758206 C methylated in CpG context: 20.9% C methylated in CHG context: 2.5% C methylated in CHH context: 5.5%