/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF03-CM03-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF03-CM03-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
64470157
Paired-end alignments with a unique best hit
16517068
Pairs without alignments under any condition
38359026
Pairs that did not map uniquely
9594063
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
372908976
Methylated C's in CpG context
9796068
Methylated C's in CHG context
1721896
Methylated C's in CHH context
15173231
Methylated C's in Unknown context
374581
Unmethylated C's in CpG context
36640081
Unmethylated C's in CHG context
67610053
Unmethylated C's in CHH context
241967647
Unmethylated C's in Unknown context
1970981
Percentage methylation (CpG context)
21.1%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
5.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4608378
original top strand
CTOT
3664120
complementary to original top strand
CTOB
3651795
complementary to original bottom strand
OB
4592768
original bottom strand
Deduplication
Alignments analysed
16517061
Unique alignments
12492794
Duplicates removed
4024267
Duplicated alignments were found at 2929707 different positions
