/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF02-CM02-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF02-CM02-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
67063678
Paired-end alignments with a unique best hit
10105983
Pairs without alignments under any condition
50657462
Pairs that did not map uniquely
6300233
Genomic sequence context not extractable (edges of chromosomes)
6
Cytosine Methylation
Total C's analysed
188887969
Methylated C's in CpG context
4107683
Methylated C's in CHG context
1286993
Methylated C's in CHH context
13086957
Methylated C's in Unknown context
266487
Unmethylated C's in CpG context
16031720
Unmethylated C's in CHG context
29129543
Unmethylated C's in CHH context
125245073
Unmethylated C's in Unknown context
1213471
Percentage methylation (CpG context)
20.4%
Percentage methylation (CHG context)
4.2%
Percentage methylation (CHH context)
9.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3000851
original top strand
CTOT
2072592
complementary to original top strand
CTOB
2052690
complementary to original bottom strand
OB
2979844
original bottom strand
Deduplication
Alignments analysed
10105977
Unique alignments
6954232
Duplicates removed
3151745
Duplicated alignments were found at 2050943 different positions