/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF01-CM02-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF01-CM02-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
70708148
Paired-end alignments with a unique best hit
24971340
Pairs without alignments under any condition
32368850
Pairs that did not map uniquely
13367958
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
761919570
Methylated C's in CpG context
21632951
Methylated C's in CHG context
2849382
Methylated C's in CHH context
15683163
Methylated C's in Unknown context
457724
Unmethylated C's in CpG context
93811696
Unmethylated C's in CHG context
157562798
Unmethylated C's in CHH context
470379580
Unmethylated C's in Unknown context
3211503
Percentage methylation (CpG context)
18.7%
Percentage methylation (CHG context)
1.8%
Percentage methylation (CHH context)
3.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6075606
original top strand
CTOT
6411238
complementary to original top strand
CTOB
6406104
complementary to original bottom strand
OB
6078385
original bottom strand
Deduplication
Alignments analysed
24971333
Unique alignments
19043207
Duplicates removed
5928126
Duplicated alignments were found at 4466783 different positions
