/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF01-CM01-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/CF01-CM01-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
32105151
Paired-end alignments with a unique best hit
4636366
Pairs without alignments under any condition
24877118
Pairs that did not map uniquely
2591667
Genomic sequence context not extractable (edges of chromosomes)
10
Cytosine Methylation
Total C's analysed
104445771
Methylated C's in CpG context
2042686
Methylated C's in CHG context
232168
Methylated C's in CHH context
3647880
Methylated C's in Unknown context
104660
Unmethylated C's in CpG context
9965003
Unmethylated C's in CHG context
17465052
Unmethylated C's in CHH context
71092982
Unmethylated C's in Unknown context
689325
Percentage methylation (CpG context)
17.0%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
4.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1252794
original top strand
CTOT
1075456
complementary to original top strand
CTOB
1067723
complementary to original bottom strand
OB
1240383
original bottom strand
Deduplication
Alignments analysed
4636356
Unique alignments
3408078
Duplicates removed
1228278
Duplicated alignments were found at 855500 different positions