CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 32 168 16.00 200 2 50 162 23.58 212 3 55 167 24.77 222 4 19 158 10.73 177 5 28 170 14.14 198 6 24 197 10.86 221 7 17 157 9.77 174 8 27 187 12.62 214 9 23 177 11.50 200 10 25 144 14.79 169 11 34 194 14.91 228 12 24 179 11.82 203 13 16 221 6.75 237 14 24 173 12.18 197 15 28 223 11.16 251 16 22 183 10.73 205 17 30 192 13.51 222 18 27 229 10.55 256 19 32 179 15.17 211 20 39 189 17.11 228 21 25 186 11.85 211 22 26 186 12.26 212 23 21 165 11.29 186 24 22 169 11.52 191 25 23 171 11.86 194 26 22 215 9.28 237 27 18 163 9.94 181 28 23 134 14.65 157 29 27 174 13.43 201 30 15 186 7.46 201 31 18 158 10.23 176 32 22 191 10.33 213 33 23 151 13.22 174 34 25 176 12.44 201 35 21 185 10.19 206 36 27 188 12.56 215 37 26 178 12.75 204 38 20 176 10.20 196 39 13 140 8.50 153 40 17 169 9.14 186 41 21 187 10.10 208 42 19 200 8.68 219 43 19 191 9.05 210 44 19 191 9.05 210 45 21 205 9.29 226 46 27 172 13.57 199 47 30 174 14.71 204 48 20 177 10.15 197 49 7 152 4.40 159 50 15 155 8.82 170 51 23 152 13.14 175 52 15 139 9.74 154 53 13 172 7.03 185 54 13 143 8.33 156 55 16 160 9.09 176 56 18 165 9.84 183 57 6 139 4.14 145 58 9 157 5.42 166 59 11 141 7.24 152 60 15 135 10.00 150 61 24 156 13.33 180 62 11 159 6.47 170 63 22 145 13.17 167 64 23 164 12.30 187 65 25 155 13.89 180 66 17 156 9.83 173 67 16 151 9.58 167 68 21 171 10.94 192 69 20 184 9.80 204 70 18 127 12.41 145 71 21 146 12.57 167 72 15 145 9.38 160 73 20 95 17.39 115 74 19 149 11.31 168 75 16 171 8.56 187 76 20 135 12.90 155 77 13 136 8.72 149 78 21 145 12.65 166 79 18 174 9.38 192 80 15 150 9.09 165 81 15 134 10.07 149 82 13 144 8.28 157 83 13 128 9.22 141 84 22 162 11.96 184 85 13 140 8.50 153 86 27 130 17.20 157 87 22 145 13.17 167 88 15 108 12.20 123 89 19 127 13.01 146 90 17 121 12.32 138 91 8 120 6.25 128 92 12 158 7.06 170 93 15 130 10.34 145 94 19 120 13.67 139 95 19 121 13.57 140 96 18 110 14.06 128 97 20 135 12.90 155 98 12 112 9.68 124 99 17 107 13.71 124 100 24 112 17.65 136 101 8 117 6.40 125 102 22 94 18.97 116 103 22 115 16.06 137 104 14 102 12.07 116 105 18 115 13.53 133 106 20 97 17.09 117 107 22 112 16.42 134 108 27 102 20.93 129 109 23 84 21.50 107 110 15 114 11.63 129 111 5 104 4.59 109 112 5 120 4.00 125 113 13 107 10.83 120 114 17 93 15.45 110 115 22 70 23.91 92 116 29 97 23.02 126 117 10 109 8.40 119 118 22 85 20.56 107 119 18 96 15.79 114 120 10 98 9.26 108 121 10 107 8.55 117 122 13 96 11.93 109 123 16 105 13.22 121 124 17 104 14.05 121 125 9 81 10.00 90 126 12 86 12.24 98 127 10 97 9.35 107 128 17 69 19.77 86 129 9 103 8.04 112 130 3 45 6.25 48 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 62 208 22.96 270 2 35 227 13.36 262 3 49 191 20.42 240 4 23 195 10.55 218 5 27 217 11.07 244 6 41 189 17.83 230 7 26 174 13.00 200 8 27 221 10.89 248 9 28 174 13.86 202 10 24 183 11.59 207 11 29 170 14.57 199 12 31 242 11.36 273 13 25 190 11.63 215 14 46 223 17.10 269 15 22 195 10.14 217 16 26 216 10.74 242 17 31 210 12.86 241 18 30 232 11.45 262 19 26 223 10.44 249 20 37 217 14.57 254 21 25 196 11.31 221 22 22 209 9.52 231 23 30 188 13.76 218 24 26 186 12.26 212 25 24 195 10.96 219 26 16 194 7.62 210 27 19 175 9.79 194 28 27 165 14.06 192 29 18 198 8.33 216 30 23 202 10.22 225 31 24 232 9.38 256 32 32 200 13.79 232 33 29 237 10.90 266 34 15 187 7.43 202 35 25 173 12.63 198 36 19 158 10.73 177 37 21 180 10.45 201 38 21 210 9.09 231 39 15 198 7.04 213 40 24 171 12.31 195 41 22 192 10.28 214 42 18 204 8.11 222 43 15 176 7.85 191 44 26 178 12.75 204 45 21 176 10.66 197 46 27 237 10.23 264 47 22 188 10.48 210 48 12 165 6.78 177 49 25 202 11.01 227 50 15 180 7.69 195 51 18 192 8.57 210 52 18 169 9.63 187 53 23 175 11.62 198 54 17 172 8.99 189 55 19 197 8.80 216 56 16 220 6.78 236 57 29 185 13.55 214 58 22 166 11.70 188 59 13 143 8.33 156 60 15 159 8.62 174 61 19 134 12.42 153 62 20 189 9.57 209 63 22 190 10.38 212 64 20 173 10.36 193 65 21 180 10.45 201 66 25 159 13.59 184 67 29 176 14.15 205 68 19 193 8.96 212 69 13 180 6.74 193 70 14 160 8.05 174 71 12 165 6.78 177 72 20 164 10.87 184 73 14 160 8.05 174 74 25 173 12.63 198 75 13 152 7.88 165 76 26 152 14.61 178 77 23 136 14.47 159 78 23 164 12.30 187 79 18 161 10.06 179 80 17 153 10.00 170 81 18 150 10.71 168 82 20 122 14.08 142 83 17 160 9.60 177 84 25 185 11.90 210 85 23 133 14.74 156 86 23 140 14.11 163 87 10 148 6.33 158 88 20 128 13.51 148 89 9 134 6.29 143 90 19 152 11.11 171 91 12 110 9.84 122 92 17 139 10.90 156 93 20 137 12.74 157 94 20 123 13.99 143 95 22 137 13.84 159 96 22 129 14.57 151 97 24 160 13.04 184 98 20 134 12.99 154 99 16 128 11.11 144 100 11 106 9.40 117 101 23 123 15.75 146 102 15 115 11.54 130 103 23 135 14.56 158 104 16 131 10.88 147 105 6 119 4.80 125 106 14 112 11.11 126 107 22 96 18.64 118 108 13 110 10.57 123 109 11 113 8.87 124 110 21 108 16.28 129 111 17 110 13.39 127 112 13 114 10.24 127 113 20 108 15.62 128 114 15 108 12.20 123 115 8 86 8.51 94 116 16 101 13.68 117 117 12 104 10.34 116 118 9 94 8.74 103 119 18 84 17.65 102 120 15 81 15.62 96 121 14 90 13.46 104 122 18 135 11.76 153 123 18 104 14.75 122 124 14 95 12.84 109 125 17 83 17.00 100 126 11 98 10.09 109 127 9 101 8.18 110 128 6 78 7.14 84 129 14 73 16.09 87 130 16 53 23.19 69 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 77 349 18.08 426 2 75 380 16.48 455 3 73 364 16.70 437 4 82 357 18.68 439 5 92 340 21.30 432 6 89 360 19.82 449 7 76 386 16.45 462 8 70 338 17.16 408 9 67 345 16.26 412 10 72 362 16.59 434 11 93 373 19.96 466 12 79 349 18.46 428 13 84 388 17.80 472 14 80 377 17.51 457 15 78 409 16.02 487 16 79 377 17.32 456 17 74 422 14.92 496 18 70 385 15.38 455 19 68 386 14.98 454 20 74 368 16.74 442 21 48 345 12.21 393 22 41 372 9.93 413 23 39 335 10.43 374 24 44 357 10.97 401 25 25 345 6.76 370 26 22 283 7.21 305 27 40 314 11.30 354 28 37 311 10.63 348 29 43 315 12.01 358 30 38 321 10.58 359 31 27 330 7.56 357 32 21 340 5.82 361 33 22 346 5.98 368 34 29 335 7.97 364 35 43 373 10.34 416 36 38 354 9.69 392 37 34 321 9.58 355 38 42 319 11.63 361 39 39 337 10.37 376 40 34 348 8.90 382 41 39 302 11.44 341 42 38 336 10.16 374 43 35 321 9.83 356 44 25 309 7.49 334 45 37 302 10.91 339 46 34 330 9.34 364 47 25 281 8.17 306 48 25 265 8.62 290 49 42 279 13.08 321 50 39 299 11.54 338 51 42 323 11.51 365 52 33 326 9.19 359 53 20 317 5.93 337 54 33 341 8.82 374 55 36 315 10.26 351 56 40 314 11.30 354 57 35 301 10.42 336 58 33 279 10.58 312 59 40 310 11.43 350 60 34 328 9.39 362 61 38 298 11.31 336 62 27 279 8.82 306 63 25 299 7.72 324 64 31 258 10.73 289 65 32 287 10.03 319 66 29 298 8.87 327 67 34 279 10.86 313 68 33 336 8.94 369 69 31 316 8.93 347 70 29 294 8.98 323 71 30 334 8.24 364 72 31 291 9.63 322 73 23 269 7.88 292 74 26 288 8.28 314 75 33 253 11.54 286 76 26 253 9.32 279 77 22 272 7.48 294 78 32 249 11.39 281 79 33 251 11.62 284 80 21 293 6.69 314 81 27 273 9.00 300 82 23 265 7.99 288 83 22 257 7.89 279 84 25 267 8.56 292 85 21 271 7.19 292 86 19 263 6.74 282 87 18 264 6.38 282 88 27 235 10.31 262 89 38 208 15.45 246 90 27 217 11.07 244 91 22 240 8.40 262 92 24 234 9.30 258 93 25 232 9.73 257 94 27 239 10.15 266 95 9 238 3.64 247 96 14 194 6.73 208 97 20 242 7.63 262 98 25 218 10.29 243 99 20 237 7.78 257 100 19 225 7.79 244 101 19 215 8.12 234 102 22 225 8.91 247 103 15 207 6.76 222 104 11 197 5.29 208 105 19 193 8.96 212 106 19 204 8.52 223 107 20 219 8.37 239 108 20 208 8.77 228 109 21 219 8.75 240 110 32 202 13.68 234 111 29 193 13.06 222 112 23 161 12.50 184 113 25 189 11.68 214 114 14 223 5.91 237 115 16 203 7.31 219 116 21 188 10.05 209 117 17 181 8.59 198 118 16 183 8.04 199 119 20 168 10.64 188 120 23 164 12.30 187 121 13 165 7.30 178 122 5 164 2.96 169 123 14 178 7.29 192 124 19 179 9.60 198 125 31 198 13.54 229 126 36 148 19.57 184 127 23 168 12.04 191 128 24 168 12.50 192 129 15 136 9.93 151 130 11 73 13.10 84 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30 66 31.25 96 2 34 69 33.01 103 3 39 55 41.49 94 4 15 62 19.48 77 5 14 95 12.84 109 6 9 91 9.00 100 7 9 73 10.98 82 8 14 79 15.05 93 9 9 89 9.18 98 10 13 74 14.94 87 11 11 80 12.09 91 12 15 61 19.74 76 13 11 62 15.07 73 14 5 78 6.02 83 15 10 76 11.63 86 16 14 62 18.42 76 17 13 78 14.29 91 18 8 70 10.26 78 19 12 39 23.53 51 20 19 50 27.54 69 21 10 58 14.71 68 22 15 59 20.27 74 23 19 55 25.68 74 24 13 63 17.11 76 25 7 67 9.46 74 26 13 49 20.97 62 27 11 44 20.00 55 28 10 53 15.87 63 29 14 51 21.54 65 30 11 60 15.49 71 31 11 53 17.19 64 32 12 48 20.00 60 33 16 37 30.19 53 34 11 53 17.19 64 35 9 51 15.00 60 36 14 55 20.29 69 37 10 51 16.39 61 38 9 55 14.06 64 39 10 44 18.52 54 40 14 55 20.29 69 41 12 56 17.65 68 42 9 57 13.64 66 43 5 41 10.87 46 44 4 44 8.33 48 45 13 37 26.00 50 46 10 44 18.52 54 47 8 41 16.33 49 48 8 33 19.51 41 49 13 46 22.03 59 50 15 30 33.33 45 51 14 34 29.17 48 52 15 45 25.00 60 53 8 28 22.22 36 54 11 26 29.73 37 55 11 39 22.00 50 56 7 32 17.95 39 57 7 28 20.00 35 58 7 25 21.88 32 59 6 42 12.50 48 60 7 41 14.58 48 61 8 43 15.69 51 62 10 36 21.74 46 63 10 40 20.00 50 64 18 33 35.29 51 65 12 39 23.53 51 66 6 34 15.00 40 67 4 26 13.33 30 68 7 27 20.59 34 69 9 43 17.31 52 70 2 34 5.56 36 71 6 26 18.75 32 72 9 38 19.15 47 73 7 28 20.00 35 74 10 29 25.64 39 75 6 30 16.67 36 76 4 33 10.81 37 77 3 29 9.38 32 78 7 37 15.91 44 79 5 30 14.29 35 80 5 37 11.90 42 81 9 32 21.95 41 82 6 31 16.22 37 83 5 29 14.71 34 84 10 40 20.00 50 85 7 31 18.42 38 86 3 33 8.33 36 87 8 30 21.05 38 88 13 25 34.21 38 89 3 29 9.38 32 90 3 17 15.00 20 91 2 22 8.33 24 92 3 28 9.68 31 93 7 31 18.42 38 94 16 25 39.02 41 95 11 26 29.73 37 96 4 19 17.39 23 97 9 26 25.71 35 98 5 19 20.83 24 99 4 19 17.39 23 100 3 23 11.54 26 101 3 23 11.54 26 102 7 10 41.18 17 103 6 19 24.00 25 104 6 23 20.69 29 105 5 23 17.86 28 106 11 15 42.31 26 107 19 16 54.29 35 108 14 21 40.00 35 109 10 21 32.26 31 110 8 17 32.00 25 111 7 18 28.00 25 112 4 20 16.67 24 113 3 22 12.00 25 114 11 19 36.67 30 115 14 12 53.85 26 116 4 11 26.67 15 117 6 17 26.09 23 118 3 19 13.64 22 119 5 12 29.41 17 120 4 15 21.05 19 121 3 16 15.79 19 122 3 13 18.75 16 123 11 12 47.83 23 124 11 16 40.74 27 125 5 13 27.78 18 126 4 12 25.00 16 127 3 13 18.75 16 128 0 18 0.00 18 129 1 24 4.00 25 130 0 13 0.00 13 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35 66 34.65 101 2 13 92 12.38 105 3 20 85 19.05 105 4 11 93 10.58 104 5 14 58 19.44 72 6 18 89 16.82 107 7 13 73 15.12 86 8 13 89 12.75 102 9 11 69 13.75 80 10 12 48 20.00 60 11 8 70 10.26 78 12 13 90 12.62 103 13 5 91 5.21 96 14 12 68 15.00 80 15 18 67 21.18 85 16 6 83 6.74 89 17 9 72 11.11 81 18 9 82 9.89 91 19 12 73 14.12 85 20 11 59 15.71 70 21 8 54 12.90 62 22 16 73 17.98 89 23 20 50 28.57 70 24 10 67 12.99 77 25 12 54 18.18 66 26 6 41 12.77 47 27 12 58 17.14 70 28 16 47 25.40 63 29 13 60 17.81 73 30 19 51 27.14 70 31 6 67 8.22 73 32 11 49 18.33 60 33 6 63 8.70 69 34 7 39 15.22 46 35 15 73 17.05 88 36 6 44 12.00 50 37 9 55 14.06 64 38 4 49 7.55 53 39 13 52 20.00 65 40 12 51 19.05 63 41 7 47 12.96 54 42 8 53 13.11 61 43 4 51 7.27 55 44 12 42 22.22 54 45 12 47 20.34 59 46 4 48 7.69 52 47 7 48 12.73 55 48 7 42 14.29 49 49 9 45 16.67 54 50 18 51 26.09 69 51 11 43 20.37 54 52 6 42 12.50 48 53 14 43 24.56 57 54 11 46 19.30 57 55 2 57 3.39 59 56 5 35 12.50 40 57 4 44 8.33 48 58 8 53 13.11 61 59 5 43 10.42 48 60 7 33 17.50 40 61 8 47 14.55 55 62 13 44 22.81 57 63 18 45 28.57 63 64 8 45 15.09 53 65 13 30 30.23 43 66 19 39 32.76 58 67 8 42 16.00 50 68 5 34 12.82 39 69 1 26 3.70 27 70 5 23 17.86 28 71 2 34 5.56 36 72 7 29 19.44 36 73 8 40 16.67 48 74 12 38 24.00 50 75 9 30 23.08 39 76 17 29 36.96 46 77 8 23 25.81 31 78 8 38 17.39 46 79 10 43 18.87 53 80 9 27 25.00 36 81 9 27 25.00 36 82 3 28 9.68 31 83 7 33 17.50 40 84 8 32 20.00 40 85 5 30 14.29 35 86 3 34 8.11 37 87 5 33 13.16 38 88 8 25 24.24 33 89 5 36 12.20 41 90 6 29 17.14 35 91 7 26 21.21 33 92 9 25 26.47 34 93 12 33 26.67 45 94 6 24 20.00 30 95 9 28 24.32 37 96 11 32 25.58 43 97 13 23 36.11 36 98 9 23 28.12 32 99 13 23 36.11 36 100 5 23 17.86 28 101 8 11 42.11 19 102 6 26 18.75 32 103 3 24 11.11 27 104 5 19 20.83 24 105 3 26 10.34 29 106 12 23 34.29 35 107 3 24 11.11 27 108 4 20 16.67 24 109 9 21 30.00 30 110 5 20 20.00 25 111 2 32 5.88 34 112 12 16 42.86 28 113 11 25 30.56 36 114 6 29 17.14 35 115 5 12 29.41 17 116 5 22 18.52 27 117 9 21 30.00 30 118 10 25 28.57 35 119 6 16 27.27 22 120 17 11 60.71 28 121 6 10 37.50 16 122 10 19 34.48 29 123 4 20 16.67 24 124 3 19 13.64 22 125 2 18 10.00 20 126 1 11 8.33 12 127 2 15 11.76 17 128 7 18 28.00 25 129 4 7 36.36 11 130 10 11 47.62 21 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 19 154 10.98 173 2 35 145 19.44 180 3 21 141 12.96 162 4 17 128 11.72 145 5 24 122 16.44 146 6 28 127 18.06 155 7 19 146 11.52 165 8 23 146 13.61 169 9 14 122 10.29 136 10 30 137 17.96 167 11 15 132 10.20 147 12 13 121 9.70 134 13 17 112 13.18 129 14 14 99 12.39 113 15 30 137 17.96 167 16 19 134 12.42 153 17 26 136 16.05 162 18 14 122 10.29 136 19 25 123 16.89 148 20 24 131 15.48 155 21 20 113 15.04 133 22 18 96 15.79 114 23 15 98 13.27 113 24 29 89 24.58 118 25 14 124 10.14 138 26 13 107 10.83 120 27 19 117 13.97 136 28 22 122 15.28 144 29 19 103 15.57 122 30 13 110 10.57 123 31 16 110 12.70 126 32 13 117 10.00 130 33 14 103 11.97 117 34 15 91 14.15 106 35 23 101 18.55 124 36 19 102 15.70 121 37 7 89 7.29 96 38 8 90 8.16 98 39 9 92 8.91 101 40 7 94 6.93 101 41 21 98 17.65 119 42 23 96 19.33 119 43 15 109 12.10 124 44 10 108 8.47 118 45 13 88 12.87 101 46 15 101 12.93 116 47 16 103 13.45 119 48 12 74 13.95 86 49 12 81 12.90 93 50 5 92 5.15 97 51 13 91 12.50 104 52 15 90 14.29 105 53 12 91 11.65 103 54 11 82 11.83 93 55 24 91 20.87 115 56 17 91 15.74 108 57 15 71 17.44 86 58 23 75 23.47 98 59 18 81 18.18 99 60 19 81 19.00 100 61 20 94 17.54 114 62 16 73 17.98 89 63 13 74 14.94 87 64 13 90 12.62 103 65 12 70 14.63 82 66 17 78 17.89 95 67 22 66 25.00 88 68 15 88 14.56 103 69 18 80 18.37 98 70 24 82 22.64 106 71 13 78 14.29 91 72 25 74 25.25 99 73 20 62 24.39 82 74 14 80 14.89 94 75 22 67 24.72 89 76 16 46 25.81 62 77 11 49 18.33 60 78 22 49 30.99 71 79 22 61 26.51 83 80 20 55 26.67 75 81 15 58 20.55 73 82 9 68 11.69 77 83 7 64 9.86 71 84 8 76 9.52 84 85 10 61 14.08 71 86 5 57 8.06 62 87 8 66 10.81 74 88 13 66 16.46 79 89 17 54 23.94 71 90 16 67 19.28 83 91 17 53 24.29 70 92 10 59 14.49 69 93 14 56 20.00 70 94 9 49 15.52 58 95 13 53 19.70 66 96 14 42 25.00 56 97 12 47 20.34 59 98 12 54 18.18 66 99 9 52 14.75 61 100 19 48 28.36 67 101 17 44 27.87 61 102 22 42 34.38 64 103 12 44 21.43 56 104 7 35 16.67 42 105 12 42 22.22 54 106 13 39 25.00 52 107 8 46 14.81 54 108 15 39 27.78 54 109 11 47 18.97 58 110 12 45 21.05 57 111 10 35 22.22 45 112 11 42 20.75 53 113 13 37 26.00 50 114 9 50 15.25 59 115 12 41 22.64 53 116 14 43 24.56 57 117 9 37 19.57 46 118 11 38 22.45 49 119 8 48 14.29 56 120 3 39 7.14 42 121 2 40 4.76 42 122 5 40 11.11 45 123 3 35 7.89 38 124 4 34 10.53 38 125 6 23 20.69 29 126 6 28 17.65 34 127 5 39 11.36 44 128 4 28 12.50 32 129 8 19 29.63 27 130 2 14 12.50 16