CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 42 154 21.43 196 2 35 119 22.73 154 3 38 136 21.84 174 4 21 123 14.58 144 5 23 158 12.71 181 6 25 153 14.04 178 7 26 156 14.29 182 8 26 182 12.50 208 9 38 168 18.45 206 10 41 135 23.30 176 11 34 170 16.67 204 12 23 143 13.86 166 13 29 181 13.81 210 14 19 175 9.79 194 15 20 162 10.99 182 16 20 157 11.30 177 17 23 170 11.92 193 18 20 140 12.50 160 19 29 147 16.48 176 20 48 156 23.53 204 21 33 142 18.86 175 22 26 138 15.85 164 23 30 158 15.96 188 24 31 137 18.45 168 25 23 149 13.37 172 26 24 153 13.56 177 27 19 122 13.48 141 28 18 110 14.06 128 29 24 151 13.71 175 30 20 164 10.87 184 31 27 141 16.07 168 32 24 129 15.69 153 33 23 140 14.11 163 34 25 162 13.37 187 35 12 117 9.30 129 36 19 148 11.38 167 37 17 158 9.71 175 38 21 122 14.69 143 39 15 141 9.62 156 40 26 134 16.25 160 41 14 158 8.14 172 42 13 146 8.18 159 43 8 151 5.03 159 44 13 152 7.88 165 45 18 128 12.33 146 46 19 143 11.73 162 47 12 149 7.45 161 48 17 103 14.17 120 49 15 135 10.00 150 50 22 124 15.07 146 51 22 107 17.05 129 52 19 120 13.67 139 53 13 113 10.32 126 54 10 110 8.33 120 55 18 113 13.74 131 56 16 134 10.67 150 57 11 124 8.15 135 58 10 110 8.33 120 59 10 123 7.52 133 60 17 94 15.32 111 61 20 111 15.27 131 62 18 123 12.77 141 63 19 100 15.97 119 64 23 111 17.16 134 65 22 119 15.60 141 66 16 126 11.27 142 67 12 129 8.51 141 68 17 140 10.83 157 69 21 129 14.00 150 70 11 100 9.91 111 71 11 117 8.59 128 72 19 107 15.08 126 73 10 77 11.49 87 74 18 119 13.14 137 75 18 98 15.52 116 76 15 113 11.72 128 77 17 104 14.05 121 78 20 110 15.38 130 79 15 133 10.14 148 80 13 118 9.92 131 81 12 104 10.34 116 82 9 120 6.98 129 83 13 87 13.00 100 84 14 110 11.29 124 85 16 96 14.29 112 86 15 98 13.27 113 87 24 113 17.52 137 88 18 97 15.65 115 89 14 111 11.20 125 90 12 96 11.11 108 91 12 104 10.34 116 92 3 152 1.94 155 93 13 102 11.30 115 94 23 76 23.23 99 95 17 87 16.35 104 96 8 96 7.69 104 97 13 72 15.29 85 98 20 74 21.28 94 99 10 90 10.00 100 100 16 72 18.18 88 101 11 72 13.25 83 102 14 62 18.42 76 103 18 108 14.29 126 104 16 72 18.18 88 105 11 83 11.70 94 106 11 68 13.92 79 107 22 72 23.40 94 108 16 65 19.75 81 109 13 78 14.29 91 110 10 75 11.76 85 111 13 72 15.29 85 112 10 75 11.76 85 113 14 74 15.91 88 114 14 66 17.50 80 115 19 61 23.75 80 116 12 55 17.91 67 117 18 77 18.95 95 118 9 67 11.84 76 119 9 72 11.11 81 120 13 71 15.48 84 121 12 85 12.37 97 122 11 67 14.10 78 123 14 76 15.56 90 124 15 84 15.15 99 125 9 66 12.00 75 126 8 60 11.76 68 127 5 68 6.85 73 128 7 54 11.48 61 129 3 88 3.30 91 130 4 31 11.43 35 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 59 184 24.28 243 2 42 203 17.14 245 3 41 155 20.92 196 4 23 176 11.56 199 5 37 128 22.42 165 6 27 142 15.98 169 7 26 165 13.61 191 8 25 176 12.44 201 9 26 145 15.20 171 10 28 177 13.66 205 11 40 131 23.39 171 12 31 195 13.72 226 13 16 152 9.52 168 14 25 175 12.50 200 15 29 178 14.01 207 16 22 164 11.83 186 17 32 174 15.53 206 18 23 187 10.95 210 19 36 177 16.90 213 20 31 183 14.49 214 21 30 155 16.22 185 22 25 174 12.56 199 23 12 146 7.59 158 24 23 132 14.84 155 25 20 131 13.25 151 26 18 133 11.92 151 27 18 158 10.23 176 28 23 133 14.74 156 29 25 150 14.29 175 30 25 157 13.74 182 31 25 196 11.31 221 32 35 177 16.51 212 33 13 170 7.10 183 34 15 171 8.06 186 35 17 146 10.43 163 36 20 132 13.16 152 37 24 131 15.48 155 38 16 158 9.20 174 39 18 151 10.65 169 40 16 145 9.94 161 41 40 143 21.86 183 42 23 160 12.57 183 43 22 157 12.29 179 44 15 137 9.87 152 45 20 156 11.36 176 46 25 145 14.71 170 47 17 134 11.26 151 48 19 133 12.50 152 49 15 157 8.72 172 50 17 124 12.06 141 51 22 131 14.38 153 52 15 127 10.56 142 53 22 156 12.36 178 54 13 131 9.03 144 55 16 153 9.47 169 56 18 154 10.47 172 57 28 142 16.47 170 58 13 148 8.07 161 59 27 106 20.30 133 60 22 127 14.77 149 61 5 133 3.62 138 62 24 139 14.72 163 63 14 147 8.70 161 64 26 118 18.06 144 65 20 124 13.89 144 66 24 133 15.29 157 67 24 128 15.79 152 68 15 153 8.93 168 69 18 133 11.92 151 70 22 96 18.64 118 71 18 103 14.88 121 72 9 117 7.14 126 73 21 109 16.15 130 74 19 97 16.38 116 75 15 143 9.49 158 76 19 97 16.38 116 77 17 89 16.04 106 78 18 112 13.85 130 79 25 120 17.24 145 80 17 112 13.18 129 81 23 108 17.56 131 82 20 98 16.95 118 83 11 126 8.03 137 84 21 105 16.67 126 85 21 99 17.50 120 86 19 137 12.18 156 87 12 136 8.11 148 88 16 106 13.11 122 89 13 109 10.66 122 90 19 92 17.12 111 91 23 78 22.77 101 92 18 111 13.95 129 93 12 116 9.38 128 94 19 93 16.96 112 95 20 100 16.67 120 96 14 93 13.08 107 97 19 99 16.10 118 98 22 88 20.00 110 99 23 108 17.56 131 100 16 89 15.24 105 101 23 76 23.23 99 102 13 107 10.83 120 103 16 79 16.84 95 104 9 105 7.89 114 105 17 83 17.00 100 106 11 109 9.17 120 107 16 71 18.39 87 108 13 84 13.40 97 109 17 79 17.71 96 110 12 69 14.81 81 111 9 98 8.41 107 112 6 93 6.06 99 113 20 92 17.86 112 114 9 87 9.38 96 115 3 55 5.17 58 116 16 72 18.18 88 117 10 73 12.05 83 118 11 86 11.34 97 119 19 75 20.21 94 120 23 68 25.27 91 121 14 54 20.59 68 122 21 107 16.41 128 123 14 78 15.22 92 124 8 64 11.11 72 125 8 74 9.76 82 126 5 67 6.94 72 127 6 84 6.67 90 128 10 71 12.35 81 129 12 49 19.67 61 130 19 40 32.20 59 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 93 364 20.35 457 2 86 344 20.00 430 3 91 325 21.88 416 4 84 357 19.05 441 5 98 345 22.12 443 6 101 359 21.96 460 7 106 353 23.09 459 8 86 357 19.41 443 9 90 327 21.58 417 10 101 339 22.95 440 11 98 364 21.21 462 12 92 345 21.05 437 13 103 393 20.77 496 14 97 331 22.66 428 15 98 391 20.04 489 16 99 368 21.20 467 17 114 372 23.46 486 18 89 365 19.60 454 19 76 352 17.76 428 20 79 326 19.51 405 21 62 305 16.89 367 22 52 273 16.00 325 23 37 280 11.67 317 24 36 249 12.63 285 25 30 295 9.23 325 26 37 244 13.17 281 27 34 244 12.23 278 28 39 248 13.59 287 29 33 236 12.27 269 30 33 212 13.47 245 31 26 198 11.61 224 32 30 244 10.95 274 33 26 241 9.74 267 34 31 221 12.30 252 35 43 249 14.73 292 36 34 269 11.22 303 37 29 244 10.62 273 38 34 240 12.41 274 39 32 248 11.43 280 40 32 260 10.96 292 41 27 236 10.27 263 42 37 236 13.55 273 43 37 221 14.34 258 44 32 212 13.11 244 45 26 237 9.89 263 46 36 250 12.59 286 47 38 263 12.62 301 48 18 233 7.17 251 49 38 239 13.72 277 50 30 263 10.24 293 51 22 284 7.19 306 52 36 260 12.16 296 53 32 248 11.43 280 54 38 228 14.29 266 55 39 240 13.98 279 56 44 206 17.60 250 57 37 211 14.92 248 58 35 222 13.62 257 59 38 212 15.20 250 60 35 245 12.50 280 61 28 244 10.29 272 62 33 227 12.69 260 63 26 254 9.29 280 64 30 244 10.95 274 65 30 230 11.54 260 66 22 212 9.40 234 67 34 207 14.11 241 68 25 203 10.96 228 69 30 256 10.49 286 70 31 219 12.40 250 71 31 272 10.23 303 72 38 234 13.97 272 73 31 187 14.22 218 74 25 182 12.08 207 75 27 194 12.22 221 76 31 190 14.03 221 77 21 211 9.05 232 78 32 199 13.85 231 79 32 217 12.85 249 80 24 210 10.26 234 81 32 166 16.16 198 82 23 208 9.96 231 83 23 193 10.65 216 84 20 204 8.93 224 85 23 203 10.18 226 86 17 177 8.76 194 87 19 197 8.80 216 88 28 162 14.74 190 89 26 165 13.61 191 90 28 170 14.14 198 91 30 162 15.62 192 92 27 139 16.27 166 93 23 172 11.79 195 94 14 187 6.97 201 95 19 162 10.50 181 96 22 184 10.68 206 97 22 161 12.02 183 98 18 189 8.70 207 99 20 170 10.53 190 100 13 166 7.26 179 101 16 171 8.56 187 102 25 166 13.09 191 103 15 161 8.52 176 104 14 128 9.86 142 105 13 154 7.78 167 106 25 141 15.06 166 107 23 166 12.17 189 108 21 190 9.95 211 109 24 169 12.44 193 110 20 144 12.20 164 111 24 158 13.19 182 112 16 120 11.76 136 113 18 146 10.98 164 114 21 180 10.45 201 115 24 176 12.00 200 116 20 170 10.53 190 117 16 122 11.59 138 118 13 144 8.28 157 119 17 137 11.04 154 120 13 142 8.39 155 121 14 134 9.46 148 122 7 128 5.19 135 123 11 132 7.69 143 124 15 112 11.81 127 125 24 134 15.19 158 126 27 132 16.98 159 127 21 133 13.64 154 128 29 130 18.24 159 129 16 111 12.60 127 130 7 66 9.59 73 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14 67 17.28 81 2 13 49 20.97 62 3 39 39 50.00 78 4 16 52 23.53 68 5 8 50 13.79 58 6 7 70 9.09 77 7 8 65 10.96 73 8 10 64 13.51 74 9 9 54 14.29 63 10 9 52 14.75 61 11 7 64 9.86 71 12 7 44 13.73 51 13 4 77 4.94 81 14 2 70 2.78 72 15 13 56 18.84 69 16 10 57 14.93 67 17 7 55 11.29 62 18 11 72 13.25 83 19 18 36 33.33 54 20 15 52 22.39 67 21 8 51 13.56 59 22 18 53 25.35 71 23 14 49 22.22 63 24 15 52 22.39 67 25 8 47 14.55 55 26 10 47 17.54 57 27 6 40 13.04 46 28 12 44 21.43 56 29 13 41 24.07 54 30 5 71 6.58 76 31 16 48 25.00 64 32 8 39 17.02 47 33 12 26 31.58 38 34 13 43 23.21 56 35 15 44 25.42 59 36 9 54 14.29 63 37 7 37 15.91 44 38 6 41 12.77 47 39 1 37 2.63 38 40 7 43 14.00 50 41 7 50 12.28 57 42 5 45 10.00 50 43 3 37 7.50 40 44 7 37 15.91 44 45 8 37 17.78 45 46 5 33 13.16 38 47 4 35 10.26 39 48 9 31 22.50 40 49 7 35 16.67 42 50 4 29 12.12 33 51 11 29 27.50 40 52 9 25 26.47 34 53 6 29 17.14 35 54 4 36 10.00 40 55 5 27 15.62 32 56 3 36 7.69 39 57 4 28 12.50 32 58 3 31 8.82 34 59 3 31 8.82 34 60 10 30 25.00 40 61 8 32 20.00 40 62 10 25 28.57 35 63 9 31 22.50 40 64 13 37 26.00 50 65 14 31 31.11 45 66 7 30 18.92 37 67 3 29 9.38 32 68 3 39 7.14 42 69 7 37 15.91 44 70 4 37 9.76 41 71 7 29 19.44 36 72 3 26 10.34 29 73 7 29 19.44 36 74 6 27 18.18 33 75 3 14 17.65 17 76 2 18 10.00 20 77 1 31 3.12 32 78 3 29 9.38 32 79 1 34 2.86 35 80 7 32 17.95 39 81 8 22 26.67 30 82 2 25 7.41 27 83 4 27 12.90 31 84 5 25 16.67 30 85 6 19 24.00 25 86 2 21 8.70 23 87 6 18 25.00 24 88 7 20 25.93 27 89 8 15 34.78 23 90 7 24 22.58 31 91 7 26 21.21 33 92 3 33 8.33 36 93 5 24 17.24 29 94 10 13 43.48 23 95 10 24 29.41 34 96 4 24 14.29 28 97 1 23 4.17 24 98 3 15 16.67 18 99 1 14 6.67 15 100 4 14 22.22 18 101 6 17 26.09 23 102 9 15 37.50 24 103 5 23 17.86 28 104 2 16 11.11 18 105 5 17 22.73 22 106 10 23 30.30 33 107 18 18 50.00 36 108 11 18 37.93 29 109 12 23 34.29 35 110 7 19 26.92 26 111 7 27 20.59 34 112 2 23 8.00 25 113 2 13 13.33 15 114 6 13 31.58 19 115 12 15 44.44 27 116 5 13 27.78 18 117 2 14 12.50 16 118 4 14 22.22 18 119 7 17 29.17 24 120 6 11 35.29 17 121 2 29 6.45 31 122 3 8 27.27 11 123 5 11 31.25 16 124 10 23 30.30 33 125 8 16 33.33 24 126 3 15 16.67 18 127 2 17 10.53 19 128 1 12 7.69 13 129 1 15 6.25 16 130 2 10 16.67 12 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18 71 20.22 89 2 25 83 23.15 108 3 14 76 15.56 90 4 8 72 10.00 80 5 6 61 8.96 67 6 17 58 22.67 75 7 5 59 7.81 64 8 9 63 12.50 72 9 7 52 11.86 59 10 4 55 6.78 59 11 5 46 9.80 51 12 10 73 12.05 83 13 5 54 8.47 59 14 8 75 9.64 83 15 17 64 20.99 81 16 6 49 10.91 55 17 19 50 27.54 69 18 8 53 13.11 61 19 4 70 5.41 74 20 8 55 12.70 63 21 13 43 23.21 56 22 8 63 11.27 71 23 12 58 17.14 70 24 5 34 12.82 39 25 11 50 18.03 61 26 5 35 12.50 40 27 6 37 13.95 43 28 10 36 21.74 46 29 11 45 19.64 56 30 20 54 27.03 74 31 5 74 6.33 79 32 10 63 13.70 73 33 13 45 22.41 58 34 6 57 9.52 63 35 5 50 9.09 55 36 6 41 12.77 47 37 11 31 26.19 42 38 12 45 21.05 57 39 11 40 21.57 51 40 9 46 16.36 55 41 9 64 12.33 73 42 4 35 10.26 39 43 6 51 10.53 57 44 10 34 22.73 44 45 8 37 17.78 45 46 2 61 3.17 63 47 8 45 15.09 53 48 8 37 17.78 45 49 5 39 11.36 44 50 14 28 33.33 42 51 6 37 13.95 43 52 11 35 23.91 46 53 10 35 22.22 45 54 10 32 23.81 42 55 3 38 7.32 41 56 12 37 24.49 49 57 10 28 26.32 38 58 3 36 7.69 39 59 7 29 19.44 36 60 2 43 4.44 45 61 9 33 21.43 42 62 8 20 28.57 28 63 12 45 21.05 57 64 6 40 13.04 46 65 7 21 25.00 28 66 11 34 24.44 45 67 10 28 26.32 38 68 3 24 11.11 27 69 4 34 10.53 38 70 4 23 14.81 27 71 3 32 8.57 35 72 6 26 18.75 32 73 6 29 17.14 35 74 9 26 25.71 35 75 4 30 11.76 34 76 12 18 40.00 30 77 10 23 30.30 33 78 2 31 6.06 33 79 8 39 17.02 47 80 5 20 20.00 25 81 3 30 9.09 33 82 2 23 8.00 25 83 4 23 14.81 27 84 12 28 30.00 40 85 5 26 16.13 31 86 7 24 22.58 31 87 3 35 7.89 38 88 3 25 10.71 28 89 1 28 3.45 29 90 6 24 20.00 30 91 3 23 11.54 26 92 8 26 23.53 34 93 6 24 20.00 30 94 5 32 13.51 37 95 6 30 16.67 36 96 11 35 23.91 46 97 9 19 32.14 28 98 4 23 14.81 27 99 5 29 14.71 34 100 9 19 32.14 28 101 9 26 25.71 35 102 2 13 13.33 15 103 3 19 13.64 22 104 8 12 40.00 20 105 2 27 6.90 29 106 6 17 26.09 23 107 4 26 13.33 30 108 8 19 29.63 27 109 5 16 23.81 21 110 5 25 16.67 30 111 5 25 16.67 30 112 6 19 24.00 25 113 9 13 40.91 22 114 7 14 33.33 21 115 4 20 16.67 24 116 3 18 14.29 21 117 8 21 27.59 29 118 2 25 7.41 27 119 4 11 26.67 15 120 10 16 38.46 26 121 3 22 12.00 25 122 9 20 31.03 29 123 5 5 50.00 10 124 1 12 7.69 13 125 0 16 0.00 16 126 2 13 13.33 15 127 2 13 13.33 15 128 1 15 6.25 16 129 4 10 28.57 14 130 8 6 57.14 14 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22 104 17.46 126 2 18 90 16.67 108 3 17 81 17.35 98 4 14 95 12.84 109 5 17 94 15.32 111 6 27 102 20.93 129 7 21 95 18.10 116 8 18 95 15.93 113 9 11 103 9.65 114 10 19 93 16.96 112 11 18 91 16.51 109 12 16 86 15.69 102 13 22 102 17.74 124 14 15 63 19.23 78 15 17 97 14.91 114 16 11 106 9.40 117 17 16 103 13.45 119 18 13 94 12.15 107 19 18 89 16.82 107 20 21 85 19.81 106 21 15 86 14.85 101 22 6 62 8.82 68 23 11 78 12.36 89 24 23 90 20.35 113 25 10 97 9.35 107 26 15 80 15.79 95 27 14 84 14.29 98 28 22 86 20.37 108 29 18 66 21.43 84 30 9 81 10.00 90 31 8 80 9.09 88 32 12 88 12.00 100 33 15 85 15.00 100 34 10 65 13.33 75 35 19 95 16.67 114 36 14 87 13.86 101 37 16 85 15.84 101 38 12 83 12.63 95 39 10 88 10.20 98 40 8 74 9.76 82 41 20 79 20.20 99 42 21 83 20.19 104 43 16 78 17.02 94 44 6 70 7.89 76 45 13 71 15.48 84 46 10 70 12.50 80 47 12 83 12.63 95 48 8 59 11.94 67 49 23 65 26.14 88 50 7 74 8.64 81 51 9 68 11.69 77 52 8 59 11.94 67 53 7 65 9.72 72 54 12 66 15.38 78 55 21 66 24.14 87 56 19 73 20.65 92 57 12 67 15.19 79 58 14 61 18.67 75 59 15 56 21.13 71 60 17 74 18.68 91 61 14 87 13.86 101 62 15 70 17.65 85 63 10 71 12.35 81 64 6 45 11.76 51 65 11 63 14.86 74 66 8 63 11.27 71 67 13 55 19.12 68 68 14 60 18.92 74 69 10 63 13.70 73 70 14 58 19.44 72 71 10 67 12.99 77 72 16 51 23.88 67 73 16 25 39.02 41 74 9 56 13.85 65 75 8 59 11.94 67 76 7 67 9.46 74 77 5 60 7.69 65 78 19 55 25.68 74 79 13 47 21.67 60 80 14 56 20.00 70 81 8 52 13.33 60 82 8 59 11.94 67 83 5 42 10.64 47 84 2 56 3.45 58 85 12 53 18.46 65 86 2 41 4.65 43 87 5 46 9.80 51 88 10 57 14.93 67 89 13 46 22.03 59 90 12 49 19.67 61 91 11 40 21.57 51 92 8 39 17.02 47 93 10 59 14.49 69 94 10 60 14.29 70 95 6 45 11.76 51 96 10 37 21.28 47 97 6 45 11.76 51 98 12 41 22.64 53 99 7 25 21.88 32 100 14 47 22.95 61 101 10 40 20.00 50 102 12 38 24.00 50 103 6 40 13.04 46 104 5 42 10.64 47 105 6 36 14.29 42 106 8 47 14.55 55 107 7 34 17.07 41 108 6 46 11.54 52 109 11 41 21.15 52 110 9 26 25.71 35 111 6 36 14.29 42 112 4 32 11.11 36 113 7 30 18.92 37 114 5 55 8.33 60 115 9 39 18.75 48 116 11 32 25.58 43 117 6 43 12.24 49 118 6 35 14.63 41 119 6 33 15.38 39 120 5 32 13.51 37 121 6 36 14.29 42 122 7 33 17.50 40 123 6 31 16.22 37 124 6 27 18.18 33 125 6 28 17.65 34 126 5 35 12.50 40 127 12 30 28.57 42 128 9 19 32.14 28 129 8 29 21.62 37 130 3 17 15.00 20