CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 23 73 23.96 96 2 15 68 18.07 83 3 24 54 30.77 78 4 10 74 11.90 84 5 16 59 21.33 75 6 8 89 8.25 97 7 8 93 7.92 101 8 15 70 17.65 85 9 16 62 20.51 78 10 22 61 26.51 83 11 24 89 21.24 113 12 17 65 20.73 82 13 6 91 6.19 97 14 12 90 11.76 102 15 8 70 10.26 78 16 8 75 9.64 83 17 22 83 20.95 105 18 12 67 15.19 79 19 11 74 12.94 85 20 27 63 30.00 90 21 17 74 18.68 91 22 14 74 15.91 88 23 11 76 12.64 87 24 16 74 17.78 90 25 17 76 18.28 93 26 8 71 10.13 79 27 15 48 23.81 63 28 10 52 16.13 62 29 15 55 21.43 70 30 14 58 19.44 72 31 13 60 17.81 73 32 17 73 18.89 90 33 18 48 27.27 66 34 14 62 18.42 76 35 10 64 13.51 74 36 11 75 12.79 86 37 15 62 19.48 77 38 14 55 20.29 69 39 13 56 18.84 69 40 9 70 11.39 79 41 10 76 11.63 86 42 8 55 12.70 63 43 7 66 9.59 73 44 13 62 17.33 75 45 13 64 16.88 77 46 9 70 11.39 79 47 12 59 16.90 71 48 14 67 17.28 81 49 13 69 15.85 82 50 11 57 16.18 68 51 11 63 14.86 74 52 12 48 20.00 60 53 8 72 10.00 80 54 7 60 10.45 67 55 15 62 19.48 77 56 9 54 14.29 63 57 5 58 7.94 63 58 8 59 11.94 67 59 4 56 6.67 60 60 10 54 15.62 64 61 14 39 26.42 53 62 9 54 14.29 63 63 12 53 18.46 65 64 8 54 12.90 62 65 22 57 27.85 79 66 6 53 10.17 59 67 9 58 13.43 67 68 14 78 15.22 92 69 10 59 14.49 69 70 9 54 14.29 63 71 7 61 10.29 68 72 7 42 14.29 49 73 8 55 12.70 63 74 10 52 16.13 62 75 13 48 21.31 61 76 8 52 13.33 60 77 13 51 20.31 64 78 19 41 31.67 60 79 9 59 13.24 68 80 7 65 9.72 72 81 7 63 10.00 70 82 15 59 20.27 74 83 6 49 10.91 55 84 17 66 20.48 83 85 8 38 17.39 46 86 9 55 14.06 64 87 17 40 29.82 57 88 10 50 16.67 60 89 9 51 15.00 60 90 11 52 17.46 63 91 7 53 11.67 60 92 4 59 6.35 63 93 11 43 20.37 54 94 12 47 20.34 59 95 15 45 25.00 60 96 13 52 20.00 65 97 12 51 19.05 63 98 10 51 16.39 61 99 8 39 17.02 47 100 11 51 17.74 62 101 8 32 20.00 40 102 5 33 13.16 38 103 6 43 12.24 49 104 2 38 5.00 40 105 6 36 14.29 42 106 7 48 12.73 55 107 14 37 27.45 51 108 11 27 28.95 38 109 12 43 21.82 55 110 9 42 17.65 51 111 8 41 16.33 49 112 9 48 15.79 57 113 3 45 6.25 48 114 6 35 14.63 41 115 18 45 28.57 63 116 15 28 34.88 43 117 9 42 17.65 51 118 7 28 20.00 35 119 9 38 19.15 47 120 7 39 15.22 46 121 10 50 16.67 60 122 9 34 20.93 43 123 9 42 17.65 51 124 7 37 15.91 44 125 16 21 43.24 37 126 2 27 6.90 29 127 7 37 15.91 44 128 5 37 11.90 42 129 3 48 5.88 51 130 6 17 26.09 23 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 24 85 22.02 109 2 25 98 20.33 123 3 32 69 31.68 101 4 13 70 15.66 83 5 14 75 15.73 89 6 18 83 17.82 101 7 6 85 6.59 91 8 15 80 15.79 95 9 13 88 12.87 101 10 22 72 23.40 94 11 18 88 16.98 106 12 31 94 24.80 125 13 14 80 14.89 94 14 14 113 11.02 127 15 11 89 11.00 100 16 12 80 13.04 92 17 13 78 14.29 91 18 19 109 14.84 128 19 9 96 8.57 105 20 14 94 12.96 108 21 21 75 21.88 96 22 16 71 18.39 87 23 9 63 12.50 72 24 7 63 10.00 70 25 12 73 14.12 85 26 14 68 17.07 82 27 10 65 13.33 75 28 13 66 16.46 79 29 9 78 10.34 87 30 12 72 14.29 84 31 14 86 14.00 100 32 17 70 19.54 87 33 8 80 9.09 88 34 14 82 14.58 96 35 13 71 15.48 84 36 9 69 11.54 78 37 6 70 7.89 76 38 11 75 12.79 86 39 10 71 12.35 81 40 15 68 18.07 83 41 22 74 22.92 96 42 15 67 18.29 82 43 8 65 10.96 73 44 9 69 11.54 78 45 10 66 13.16 76 46 15 79 15.96 94 47 11 69 13.75 80 48 15 58 20.55 73 49 15 78 16.13 93 50 4 60 6.25 64 51 10 67 12.99 77 52 12 72 14.29 84 53 14 59 19.18 73 54 15 66 18.52 81 55 8 68 10.53 76 56 15 69 17.86 84 57 14 69 16.87 83 58 11 63 14.86 74 59 13 61 17.57 74 60 5 61 7.58 66 61 7 56 11.11 63 62 13 71 15.48 84 63 17 76 18.28 93 64 18 72 20.00 90 65 15 67 18.29 82 66 11 62 15.07 73 67 12 80 13.04 92 68 12 67 15.19 79 69 6 75 7.41 81 70 11 59 15.71 70 71 8 60 11.76 68 72 12 40 23.08 52 73 9 68 11.69 77 74 14 71 16.47 85 75 14 46 23.33 60 76 10 54 15.62 64 77 11 63 14.86 74 78 6 62 8.82 68 79 10 66 13.16 76 80 11 63 14.86 74 81 10 63 13.70 73 82 10 48 17.24 58 83 15 57 20.83 72 84 8 47 14.55 55 85 17 55 23.61 72 86 10 64 13.51 74 87 10 56 15.15 66 88 12 58 17.14 70 89 14 52 21.21 66 90 9 53 14.52 62 91 12 59 16.90 71 92 14 51 21.54 65 93 10 56 15.15 66 94 14 52 21.21 66 95 16 44 26.67 60 96 18 54 25.00 72 97 13 60 17.81 73 98 14 58 19.44 72 99 11 52 17.46 63 100 10 50 16.67 60 101 13 53 19.70 66 102 9 55 14.06 64 103 11 43 20.37 54 104 10 42 19.23 52 105 6 49 10.91 55 106 8 47 14.55 55 107 7 39 15.22 46 108 13 48 21.31 61 109 8 45 15.09 53 110 5 29 14.71 34 111 8 53 13.11 61 112 6 59 9.23 65 113 10 52 16.13 62 114 12 43 21.82 55 115 2 46 4.17 48 116 15 40 27.27 55 117 6 43 12.24 49 118 7 41 14.58 48 119 15 41 26.79 56 120 20 41 32.79 61 121 11 41 21.15 52 122 15 44 25.42 59 123 4 38 9.52 42 124 4 33 10.81 37 125 7 45 13.46 52 126 11 41 21.15 52 127 4 38 9.52 42 128 7 37 15.91 44 129 11 27 28.95 38 130 8 27 22.86 35 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 60 176 25.42 236 2 64 190 25.20 254 3 68 167 28.94 235 4 73 229 24.17 302 5 84 180 31.82 264 6 46 183 20.09 229 7 75 164 31.38 239 8 58 179 24.47 237 9 58 202 22.31 260 10 84 177 32.18 261 11 77 188 29.06 265 12 75 185 28.85 260 13 82 173 32.16 255 14 85 186 31.37 271 15 69 205 25.18 274 16 76 193 28.25 269 17 73 192 27.55 265 18 65 215 23.21 280 19 68 188 26.56 256 20 56 192 22.58 248 21 43 147 22.63 190 22 24 101 19.20 125 23 16 137 10.46 153 24 23 113 16.91 136 25 18 115 13.53 133 26 22 113 16.30 135 27 31 108 22.30 139 28 15 131 10.27 146 29 23 107 17.69 130 30 17 121 12.32 138 31 24 110 17.91 134 32 17 113 13.08 130 33 8 127 5.93 135 34 16 113 12.40 129 35 20 110 15.38 130 36 26 88 22.81 114 37 14 127 9.93 141 38 25 122 17.01 147 39 25 114 17.99 139 40 9 137 6.16 146 41 18 103 14.88 121 42 23 108 17.56 131 43 26 101 20.47 127 44 14 98 12.50 112 45 15 103 12.71 118 46 17 100 14.53 117 47 11 101 9.82 112 48 13 98 11.71 111 49 20 88 18.52 108 50 20 104 16.13 124 51 30 108 21.74 138 52 25 107 18.94 132 53 13 118 9.92 131 54 18 105 14.63 123 55 31 111 21.83 142 56 23 112 17.04 135 57 23 109 17.42 132 58 22 95 18.80 117 59 22 85 20.56 107 60 27 134 16.77 161 61 16 109 12.80 125 62 17 114 12.98 131 63 13 111 10.48 124 64 15 103 12.71 118 65 16 103 13.45 119 66 12 106 10.17 118 67 17 86 16.50 103 68 12 93 11.43 105 69 23 121 15.97 144 70 25 128 16.34 153 71 18 119 13.14 137 72 16 112 12.50 128 73 20 94 17.54 114 74 14 93 13.08 107 75 11 86 11.34 97 76 21 82 20.39 103 77 11 90 10.89 101 78 15 89 14.42 104 79 22 103 17.60 125 80 18 108 14.29 126 81 13 100 11.50 113 82 10 112 8.20 122 83 12 97 11.01 109 84 12 116 9.38 128 85 14 114 10.94 128 86 12 98 10.91 110 87 9 125 6.72 134 88 21 90 18.92 111 89 17 66 20.48 83 90 21 82 20.39 103 91 17 85 16.67 102 92 12 94 11.32 106 93 13 103 11.21 116 94 13 73 15.12 86 95 7 86 7.53 93 96 10 82 10.87 92 97 8 78 9.30 86 98 17 80 17.53 97 99 10 68 12.82 78 100 4 82 4.65 86 101 7 84 7.69 91 102 14 63 18.18 77 103 16 75 17.58 91 104 15 67 18.29 82 105 12 70 14.63 82 106 14 68 17.07 82 107 11 78 12.36 89 108 11 87 11.22 98 109 9 76 10.59 85 110 10 77 11.49 87 111 9 70 11.39 79 112 14 71 16.47 85 113 14 73 16.09 87 114 8 87 8.42 95 115 9 82 9.89 91 116 7 80 8.05 87 117 10 66 13.16 76 118 1 71 1.39 72 119 8 82 8.89 90 120 6 59 9.23 65 121 8 59 11.94 67 122 5 75 6.25 80 123 8 67 10.67 75 124 12 63 16.00 75 125 14 59 19.18 73 126 13 61 17.57 74 127 11 80 12.09 91 128 16 54 22.86 70 129 19 43 30.65 62 130 7 23 23.33 30 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11 26 29.73 37 2 10 22 31.25 32 3 21 22 48.84 43 4 12 26 31.58 38 5 4 33 10.81 37 6 4 32 11.11 36 7 7 29 19.44 36 8 6 24 20.00 30 9 6 36 14.29 42 10 5 20 20.00 25 11 6 36 14.29 42 12 2 32 5.88 34 13 3 28 9.68 31 14 7 34 17.07 41 15 2 28 6.67 30 16 10 28 26.32 38 17 5 32 13.51 37 18 8 21 27.59 29 19 9 15 37.50 24 20 7 15 31.82 22 21 11 26 29.73 37 22 12 28 30.00 40 23 7 34 17.07 41 24 10 26 27.78 36 25 7 21 25.00 28 26 6 20 23.08 26 27 5 21 19.23 26 28 10 20 33.33 30 29 7 12 36.84 19 30 7 15 31.82 22 31 9 11 45.00 20 32 8 27 22.86 35 33 8 20 28.57 28 34 5 19 20.83 24 35 4 17 19.05 21 36 7 23 23.33 30 37 8 22 26.67 30 38 7 13 35.00 20 39 5 21 19.23 26 40 4 23 14.81 27 41 8 15 34.78 23 42 9 21 30.00 30 43 7 16 30.43 23 44 7 15 31.82 22 45 5 17 22.73 22 46 3 9 25.00 12 47 8 16 33.33 24 48 5 15 25.00 20 49 8 13 38.10 21 50 2 15 11.76 17 51 6 10 37.50 16 52 7 7 50.00 14 53 7 11 38.89 18 54 2 5 28.57 7 55 5 10 33.33 15 56 6 12 33.33 18 57 1 16 5.88 17 58 6 10 37.50 16 59 2 9 18.18 11 60 5 6 45.45 11 61 6 18 25.00 24 62 2 15 11.76 17 63 6 9 40.00 15 64 9 14 39.13 23 65 7 8 46.67 15 66 3 8 27.27 11 67 4 12 25.00 16 68 3 20 13.04 23 69 9 8 52.94 17 70 5 13 27.78 18 71 5 7 41.67 12 72 3 11 21.43 14 73 7 10 41.18 17 74 5 10 33.33 15 75 1 13 7.14 14 76 5 12 29.41 17 77 1 15 6.25 16 78 2 12 14.29 14 79 4 8 33.33 12 80 3 8 27.27 11 81 3 12 20.00 15 82 3 11 21.43 14 83 2 11 15.38 13 84 8 6 57.14 14 85 2 6 25.00 8 86 6 6 50.00 12 87 5 8 38.46 13 88 8 8 50.00 16 89 0 8 0.00 8 90 3 7 30.00 10 91 1 6 14.29 7 92 5 9 35.71 14 93 5 8 38.46 13 94 8 9 47.06 17 95 6 8 42.86 14 96 3 8 27.27 11 97 3 4 42.86 7 98 3 9 25.00 12 99 4 6 40.00 10 100 1 5 16.67 6 101 3 8 27.27 11 102 6 2 75.00 8 103 5 15 25.00 20 104 4 2 66.67 6 105 3 11 21.43 14 106 6 7 46.15 13 107 6 4 60.00 10 108 7 3 70.00 10 109 7 11 38.89 18 110 4 8 33.33 12 111 3 5 37.50 8 112 0 6 0.00 6 113 3 2 60.00 5 114 6 0 100.00 6 115 9 2 81.82 11 116 2 6 25.00 8 117 3 2 60.00 5 118 3 5 37.50 8 119 4 5 44.44 9 120 2 6 25.00 8 121 2 5 28.57 7 122 2 4 33.33 6 123 3 2 60.00 5 124 6 6 50.00 12 125 3 4 42.86 7 126 2 1 66.67 3 127 1 8 11.11 9 128 4 5 44.44 9 129 1 5 16.67 6 130 0 5 0.00 5 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 19 46 29.23 65 2 7 37 15.91 44 3 13 34 27.66 47 4 7 33 17.50 40 5 5 28 15.15 33 6 13 33 28.26 46 7 4 32 11.11 36 8 4 31 11.43 35 9 9 32 21.95 41 10 13 26 33.33 39 11 2 27 6.90 29 12 7 25 21.88 32 13 6 39 13.33 45 14 5 27 15.62 32 15 10 27 27.03 37 16 9 33 21.43 42 17 6 30 16.67 36 18 8 30 21.05 38 19 6 23 20.69 29 20 7 24 22.58 31 21 4 24 14.29 28 22 12 38 24.00 50 23 10 20 33.33 30 24 4 22 15.38 26 25 12 20 37.50 32 26 6 18 25.00 24 27 11 27 28.95 38 28 7 19 26.92 26 29 6 18 25.00 24 30 11 22 33.33 33 31 6 29 17.14 35 32 6 20 23.08 26 33 4 22 15.38 26 34 3 26 10.34 29 35 9 23 28.12 32 36 4 12 25.00 16 37 6 16 27.27 22 38 7 25 21.88 32 39 3 17 15.00 20 40 8 17 32.00 25 41 7 18 28.00 25 42 5 15 25.00 20 43 7 12 36.84 19 44 9 18 33.33 27 45 6 18 25.00 24 46 3 18 14.29 21 47 3 12 20.00 15 48 8 9 47.06 17 49 7 13 35.00 20 50 9 15 37.50 24 51 6 11 35.29 17 52 11 20 35.48 31 53 7 15 31.82 22 54 3 9 25.00 12 55 2 21 8.70 23 56 5 14 26.32 19 57 6 6 50.00 12 58 4 12 25.00 16 59 4 9 30.77 13 60 7 11 38.89 18 61 10 14 41.67 24 62 4 12 25.00 16 63 7 11 38.89 18 64 10 16 38.46 26 65 8 12 40.00 20 66 3 6 33.33 9 67 6 11 35.29 17 68 7 9 43.75 16 69 6 9 40.00 15 70 6 12 33.33 18 71 5 8 38.46 13 72 8 13 38.10 21 73 3 11 21.43 14 74 4 14 22.22 18 75 5 3 62.50 8 76 9 11 45.00 20 77 4 9 30.77 13 78 7 12 36.84 19 79 4 6 40.00 10 80 5 18 21.74 23 81 2 6 25.00 8 82 2 7 22.22 9 83 5 12 29.41 17 84 7 16 30.43 23 85 2 8 20.00 10 86 6 16 27.27 22 87 2 9 18.18 11 88 0 6 0.00 6 89 1 8 11.11 9 90 5 11 31.25 16 91 6 17 26.09 23 92 7 5 58.33 12 93 5 15 25.00 20 94 8 7 53.33 15 95 9 7 56.25 16 96 5 8 38.46 13 97 1 19 5.00 20 98 7 8 46.67 15 99 7 8 46.67 15 100 3 6 33.33 9 101 5 6 45.45 11 102 0 8 0.00 8 103 4 8 33.33 12 104 7 5 58.33 12 105 3 3 50.00 6 106 2 9 18.18 11 107 3 5 37.50 8 108 8 6 57.14 14 109 7 6 53.85 13 110 0 6 0.00 6 111 1 5 16.67 6 112 4 9 30.77 13 113 7 5 58.33 12 114 7 7 50.00 14 115 3 4 42.86 7 116 3 5 37.50 8 117 10 2 83.33 12 118 6 2 75.00 8 119 3 5 37.50 8 120 6 5 54.55 11 121 7 5 58.33 12 122 6 10 37.50 16 123 2 11 15.38 13 124 1 9 10.00 10 125 0 2 0.00 2 126 2 5 28.57 7 127 5 3 62.50 8 128 1 5 16.67 6 129 2 8 20.00 10 130 4 1 80.00 5 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12 59 16.90 71 2 14 51 21.54 65 3 7 53 11.67 60 4 7 44 13.73 51 5 19 37 33.93 56 6 20 59 25.32 79 7 10 35 22.22 45 8 6 48 11.11 54 9 8 44 15.38 52 10 3 51 5.56 54 11 10 46 17.86 56 12 12 48 20.00 60 13 16 45 26.23 61 14 13 39 25.00 52 15 11 51 17.74 62 16 14 51 21.54 65 17 10 52 16.13 62 18 6 63 8.70 69 19 18 43 29.51 61 20 12 35 25.53 47 21 13 41 24.07 54 22 5 40 11.11 45 23 4 38 9.52 42 24 11 41 21.15 52 25 4 48 7.69 52 26 5 38 11.63 43 27 9 43 17.31 52 28 8 44 15.38 52 29 14 35 28.57 49 30 8 40 16.67 48 31 7 37 15.91 44 32 2 24 7.69 26 33 4 38 9.52 42 34 14 29 32.56 43 35 13 40 24.53 53 36 13 31 29.55 44 37 6 41 12.77 47 38 9 32 21.95 41 39 9 32 21.95 41 40 1 37 2.63 38 41 11 37 22.92 48 42 14 32 30.43 46 43 8 39 17.02 47 44 6 25 19.35 31 45 8 28 22.22 36 46 10 28 26.32 38 47 11 32 25.58 43 48 8 27 22.86 35 49 12 25 32.43 37 50 9 32 21.95 41 51 8 31 20.51 39 52 11 26 29.73 37 53 5 35 12.50 40 54 3 27 10.00 30 55 17 28 37.78 45 56 4 31 11.43 35 57 9 27 25.00 36 58 14 28 33.33 42 59 9 22 29.03 31 60 8 22 26.67 30 61 6 21 22.22 27 62 3 23 11.54 26 63 8 21 27.59 29 64 8 27 22.86 35 65 5 14 26.32 19 66 7 27 20.59 34 67 7 25 21.88 32 68 5 28 15.15 33 69 10 25 28.57 35 70 17 22 43.59 39 71 4 20 16.67 24 72 8 22 26.67 30 73 14 17 45.16 31 74 8 15 34.78 23 75 10 13 43.48 23 76 6 21 22.22 27 77 9 15 37.50 24 78 8 15 34.78 23 79 9 17 34.62 26 80 10 24 29.41 34 81 5 18 21.74 23 82 9 16 36.00 25 83 3 12 20.00 15 84 1 16 5.88 17 85 6 17 26.09 23 86 6 17 26.09 23 87 4 22 15.38 26 88 6 15 28.57 21 89 8 5 61.54 13 90 5 14 26.32 19 91 5 13 27.78 18 92 6 22 21.43 28 93 7 19 26.92 26 94 5 14 26.32 19 95 3 10 23.08 13 96 7 13 35.00 20 97 8 7 53.33 15 98 3 9 25.00 12 99 3 19 13.64 22 100 14 11 56.00 25 101 7 12 36.84 19 102 6 10 37.50 16 103 5 14 26.32 19 104 3 12 20.00 15 105 4 9 30.77 13 106 4 12 25.00 16 107 6 11 35.29 17 108 5 4 55.56 9 109 7 8 46.67 15 110 7 11 38.89 18 111 9 12 42.86 21 112 6 8 42.86 14 113 5 10 33.33 15 114 7 10 41.18 17 115 8 10 44.44 18 116 9 8 52.94 17 117 4 13 23.53 17 118 8 8 50.00 16 119 6 9 40.00 15 120 5 10 33.33 15 121 4 12 25.00 16 122 7 11 38.89 18 123 8 7 53.33 15 124 4 3 57.14 7 125 3 11 21.43 14 126 7 9 43.75 16 127 6 10 37.50 16 128 4 15 21.05 19 129 7 10 41.18 17 130 3 5 37.50 8