CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 45 13.46 52 2 6 49 10.91 55 3 5 41 10.87 46 4 2 46 4.17 48 5 2 42 4.55 44 6 1 39 2.50 40 7 0 41 0.00 41 8 2 46 4.17 48 9 4 40 9.09 44 10 4 48 7.69 52 11 5 37 11.90 42 12 8 56 12.50 64 13 3 55 5.17 58 14 7 58 10.77 65 15 7 49 12.50 56 16 8 42 16.00 50 17 4 36 10.00 40 18 1 42 2.33 43 19 4 41 8.89 45 20 7 39 15.22 46 21 3 44 6.38 47 22 1 37 2.63 38 23 0 31 0.00 31 24 1 28 3.45 29 25 0 31 0.00 31 26 0 22 0.00 22 27 0 25 0.00 25 28 1 39 2.50 40 29 0 22 0.00 22 30 0 23 0.00 23 31 0 26 0.00 26 32 1 26 3.70 27 33 0 19 0.00 19 34 0 18 0.00 18 35 0 21 0.00 21 36 0 21 0.00 21 37 0 37 0.00 37 38 2 24 7.69 26 39 1 27 3.57 28 40 0 31 0.00 31 41 0 41 0.00 41 42 0 35 0.00 35 43 0 28 0.00 28 44 2 34 5.56 36 45 0 19 0.00 19 46 1 29 3.33 30 47 0 26 0.00 26 48 0 29 0.00 29 49 0 28 0.00 28 50 1 18 5.26 19 51 0 22 0.00 22 52 0 19 0.00 19 53 0 24 0.00 24 54 0 17 0.00 17 55 0 22 0.00 22 56 0 19 0.00 19 57 0 33 0.00 33 58 1 24 4.00 25 59 0 16 0.00 16 60 1 23 4.17 24 61 1 25 3.85 26 62 0 25 0.00 25 63 1 23 4.17 24 64 1 24 4.00 25 65 0 25 0.00 25 66 2 20 9.09 22 67 0 27 0.00 27 68 0 21 0.00 21 69 0 20 0.00 20 70 0 19 0.00 19 71 0 24 0.00 24 72 0 14 0.00 14 73 0 14 0.00 14 74 0 22 0.00 22 75 0 11 0.00 11 76 0 14 0.00 14 77 0 20 0.00 20 78 0 16 0.00 16 79 0 17 0.00 17 80 0 22 0.00 22 81 0 16 0.00 16 82 0 21 0.00 21 83 0 24 0.00 24 84 0 18 0.00 18 85 0 14 0.00 14 86 0 16 0.00 16 87 1 10 9.09 11 88 0 10 0.00 10 89 1 24 4.00 25 90 0 17 0.00 17 91 0 19 0.00 19 92 0 22 0.00 22 93 1 14 6.67 15 94 0 12 0.00 12 95 0 13 0.00 13 96 0 12 0.00 12 97 0 26 0.00 26 98 0 16 0.00 16 99 0 12 0.00 12 100 0 22 0.00 22 101 0 9 0.00 9 102 0 8 0.00 8 103 0 18 0.00 18 104 0 14 0.00 14 105 0 7 0.00 7 106 0 15 0.00 15 107 0 11 0.00 11 108 0 8 0.00 8 109 0 14 0.00 14 110 0 8 0.00 8 111 0 11 0.00 11 112 0 13 0.00 13 113 1 12 7.69 13 114 0 6 0.00 6 115 0 12 0.00 12 116 0 10 0.00 10 117 0 15 0.00 15 118 0 9 0.00 9 119 0 14 0.00 14 120 0 14 0.00 14 121 0 13 0.00 13 122 0 12 0.00 12 123 0 8 0.00 8 124 0 16 0.00 16 125 0 12 0.00 12 126 0 9 0.00 9 127 0 8 0.00 8 128 0 4 0.00 4 129 0 14 0.00 14 130 0 2 0.00 2 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11 63 14.86 74 2 14 63 18.18 77 3 4 58 6.45 62 4 2 57 3.39 59 5 3 30 9.09 33 6 0 40 0.00 40 7 3 50 5.66 53 8 2 54 3.57 56 9 1 49 2.00 50 10 4 35 10.26 39 11 5 51 8.93 56 12 8 45 15.09 53 13 2 47 4.08 49 14 2 54 3.57 56 15 2 45 4.26 47 16 7 50 12.28 57 17 1 46 2.13 47 18 1 47 2.08 48 19 9 72 11.11 81 20 5 48 9.43 53 21 6 51 10.53 57 22 3 34 8.11 37 23 1 33 2.94 34 24 0 33 0.00 33 25 0 23 0.00 23 26 0 26 0.00 26 27 0 36 0.00 36 28 0 27 0.00 27 29 1 32 3.03 33 30 0 31 0.00 31 31 1 36 2.70 37 32 0 29 0.00 29 33 0 26 0.00 26 34 0 34 0.00 34 35 0 21 0.00 21 36 0 23 0.00 23 37 0 41 0.00 41 38 0 31 0.00 31 39 0 25 0.00 25 40 0 25 0.00 25 41 2 30 6.25 32 42 0 24 0.00 24 43 0 24 0.00 24 44 0 26 0.00 26 45 1 24 4.00 25 46 1 25 3.85 26 47 0 33 0.00 33 48 0 24 0.00 24 49 2 18 10.00 20 50 0 25 0.00 25 51 1 14 6.67 15 52 0 25 0.00 25 53 0 30 0.00 30 54 0 25 0.00 25 55 1 30 3.23 31 56 0 22 0.00 22 57 1 27 3.57 28 58 0 20 0.00 20 59 1 23 4.17 24 60 0 21 0.00 21 61 0 19 0.00 19 62 0 23 0.00 23 63 0 25 0.00 25 64 0 27 0.00 27 65 1 25 3.85 26 66 0 21 0.00 21 67 0 26 0.00 26 68 1 24 4.00 25 69 1 18 5.26 19 70 0 21 0.00 21 71 1 25 3.85 26 72 0 28 0.00 28 73 0 14 0.00 14 74 0 17 0.00 17 75 0 19 0.00 19 76 0 17 0.00 17 77 0 19 0.00 19 78 2 24 7.69 26 79 1 25 3.85 26 80 0 12 0.00 12 81 0 19 0.00 19 82 0 15 0.00 15 83 0 22 0.00 22 84 0 31 0.00 31 85 0 23 0.00 23 86 0 20 0.00 20 87 1 25 3.85 26 88 0 22 0.00 22 89 0 14 0.00 14 90 0 13 0.00 13 91 1 13 7.14 14 92 0 18 0.00 18 93 0 20 0.00 20 94 0 18 0.00 18 95 0 16 0.00 16 96 1 13 7.14 14 97 1 21 4.55 22 98 0 17 0.00 17 99 0 17 0.00 17 100 0 14 0.00 14 101 0 21 0.00 21 102 0 13 0.00 13 103 0 20 0.00 20 104 0 17 0.00 17 105 0 12 0.00 12 106 1 9 10.00 10 107 0 14 0.00 14 108 0 17 0.00 17 109 0 13 0.00 13 110 0 16 0.00 16 111 0 13 0.00 13 112 0 14 0.00 14 113 0 14 0.00 14 114 0 13 0.00 13 115 0 7 0.00 7 116 0 15 0.00 15 117 0 13 0.00 13 118 0 9 0.00 9 119 0 8 0.00 8 120 0 14 0.00 14 121 0 8 0.00 8 122 0 11 0.00 11 123 0 11 0.00 11 124 0 7 0.00 7 125 0 12 0.00 12 126 1 12 7.69 13 127 0 8 0.00 8 128 0 12 0.00 12 129 0 8 0.00 8 130 0 6 0.00 6 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 34 128 20.99 162 2 47 137 25.54 184 3 54 128 29.67 182 4 61 161 27.48 222 5 58 149 28.02 207 6 66 135 32.84 201 7 52 164 24.07 216 8 56 140 28.57 196 9 54 144 27.27 198 10 61 159 27.73 220 11 59 160 26.94 219 12 61 141 30.20 202 13 52 142 26.80 194 14 57 153 27.14 210 15 64 155 29.22 219 16 68 150 31.19 218 17 59 186 24.08 245 18 56 145 27.86 201 19 45 137 24.73 182 20 49 149 24.75 198 21 28 91 23.53 119 22 19 82 18.81 101 23 9 69 11.54 78 24 1 57 1.72 58 25 2 49 3.92 51 26 3 49 5.77 52 27 2 56 3.45 58 28 1 50 1.96 51 29 0 39 0.00 39 30 0 50 0.00 50 31 0 54 0.00 54 32 0 37 0.00 37 33 0 48 0.00 48 34 1 43 2.27 44 35 0 52 0.00 52 36 1 47 2.08 48 37 0 47 0.00 47 38 0 45 0.00 45 39 1 44 2.22 45 40 1 46 2.13 47 41 0 34 0.00 34 42 1 39 2.50 40 43 1 43 2.27 44 44 0 42 0.00 42 45 1 43 2.27 44 46 1 43 2.27 44 47 1 55 1.79 56 48 2 46 4.17 48 49 0 51 0.00 51 50 1 41 2.38 42 51 1 55 1.79 56 52 1 41 2.38 42 53 0 34 0.00 34 54 0 46 0.00 46 55 0 36 0.00 36 56 0 40 0.00 40 57 0 30 0.00 30 58 0 45 0.00 45 59 1 49 2.00 50 60 0 36 0.00 36 61 2 32 5.88 34 62 1 36 2.70 37 63 0 36 0.00 36 64 0 42 0.00 42 65 0 46 0.00 46 66 0 25 0.00 25 67 0 44 0.00 44 68 0 38 0.00 38 69 0 49 0.00 49 70 0 51 0.00 51 71 0 38 0.00 38 72 1 45 2.17 46 73 2 40 4.76 42 74 0 30 0.00 30 75 1 34 2.86 35 76 0 26 0.00 26 77 0 29 0.00 29 78 0 39 0.00 39 79 1 40 2.44 41 80 1 39 2.50 40 81 0 37 0.00 37 82 0 36 0.00 36 83 0 38 0.00 38 84 1 39 2.50 40 85 0 35 0.00 35 86 0 26 0.00 26 87 0 32 0.00 32 88 0 33 0.00 33 89 0 34 0.00 34 90 0 23 0.00 23 91 0 26 0.00 26 92 0 30 0.00 30 93 1 25 3.85 26 94 0 28 0.00 28 95 0 25 0.00 25 96 0 23 0.00 23 97 0 27 0.00 27 98 0 23 0.00 23 99 0 29 0.00 29 100 0 33 0.00 33 101 0 24 0.00 24 102 0 31 0.00 31 103 0 23 0.00 23 104 0 30 0.00 30 105 0 31 0.00 31 106 2 24 7.69 26 107 0 38 0.00 38 108 1 23 4.17 24 109 0 28 0.00 28 110 0 22 0.00 22 111 0 22 0.00 22 112 0 21 0.00 21 113 0 25 0.00 25 114 0 32 0.00 32 115 0 25 0.00 25 116 0 22 0.00 22 117 0 20 0.00 20 118 0 21 0.00 21 119 0 24 0.00 24 120 0 21 0.00 21 121 0 28 0.00 28 122 0 23 0.00 23 123 0 22 0.00 22 124 2 23 8.00 25 125 0 19 0.00 19 126 0 21 0.00 21 127 1 25 3.85 26 128 1 24 4.00 25 129 1 19 5.00 20 130 0 11 0.00 11 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 6 14.29 7 2 1 12 7.69 13 3 3 7 30.00 10 4 0 9 0.00 9 5 0 10 0.00 10 6 0 10 0.00 10 7 0 8 0.00 8 8 0 11 0.00 11 9 0 9 0.00 9 10 0 9 0.00 9 11 0 10 0.00 10 12 0 6 0.00 6 13 0 7 0.00 7 14 0 7 0.00 7 15 0 16 0.00 16 16 0 7 0.00 7 17 0 12 0.00 12 18 0 7 0.00 7 19 0 7 0.00 7 20 0 4 0.00 4 21 0 10 0.00 10 22 0 9 0.00 9 23 0 8 0.00 8 24 2 4 33.33 6 25 0 5 0.00 5 26 0 5 0.00 5 27 0 4 0.00 4 28 0 7 0.00 7 29 0 9 0.00 9 30 0 9 0.00 9 31 0 9 0.00 9 32 0 6 0.00 6 33 0 5 0.00 5 34 0 5 0.00 5 35 0 8 0.00 8 36 0 4 0.00 4 37 0 8 0.00 8 38 0 8 0.00 8 39 0 5 0.00 5 40 0 8 0.00 8 41 0 7 0.00 7 42 0 4 0.00 4 43 0 2 0.00 2 44 0 5 0.00 5 45 0 6 0.00 6 46 0 3 0.00 3 47 0 6 0.00 6 48 0 3 0.00 3 49 0 4 0.00 4 50 0 3 0.00 3 51 0 2 0.00 2 52 0 7 0.00 7 53 0 4 0.00 4 54 0 3 0.00 3 55 0 1 0.00 1 56 1 8 11.11 9 57 0 4 0.00 4 58 0 0 0 59 0 5 0.00 5 60 0 1 0.00 1 61 0 4 0.00 4 62 0 1 0.00 1 63 0 5 0.00 5 64 0 4 0.00 4 65 0 3 0.00 3 66 0 1 0.00 1 67 0 1 0.00 1 68 0 3 0.00 3 69 0 2 0.00 2 70 0 6 0.00 6 71 0 3 0.00 3 72 0 2 0.00 2 73 0 3 0.00 3 74 0 1 0.00 1 75 0 2 0.00 2 76 0 1 0.00 1 77 0 3 0.00 3 78 0 2 0.00 2 79 0 6 0.00 6 80 0 3 0.00 3 81 0 6 0.00 6 82 0 2 0.00 2 83 0 3 0.00 3 84 0 3 0.00 3 85 0 2 0.00 2 86 0 4 0.00 4 87 0 1 0.00 1 88 0 1 0.00 1 89 0 4 0.00 4 90 0 1 0.00 1 91 0 1 0.00 1 92 0 5 0.00 5 93 0 2 0.00 2 94 0 3 0.00 3 95 0 0 0 96 0 3 0.00 3 97 0 2 0.00 2 98 0 1 0.00 1 99 0 1 0.00 1 100 0 2 0.00 2 101 0 0 0 102 0 1 0.00 1 103 0 2 0.00 2 104 0 2 0.00 2 105 0 0 0 106 0 3 0.00 3 107 0 2 0.00 2 108 0 2 0.00 2 109 0 1 0.00 1 110 0 4 0.00 4 111 0 1 0.00 1 112 0 2 0.00 2 113 0 5 0.00 5 114 0 1 0.00 1 115 0 3 0.00 3 116 0 2 0.00 2 117 0 1 0.00 1 118 0 2 0.00 2 119 0 1 0.00 1 120 0 1 0.00 1 121 0 2 0.00 2 122 0 1 0.00 1 123 0 1 0.00 1 124 0 1 0.00 1 125 0 2 0.00 2 126 0 2 0.00 2 127 0 1 0.00 1 128 0 2 0.00 2 129 0 3 0.00 3 130 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 20 9.09 22 2 3 9 25.00 12 3 2 11 15.38 13 4 1 12 7.69 13 5 0 11 0.00 11 6 1 12 7.69 13 7 0 10 0.00 10 8 0 9 0.00 9 9 0 10 0.00 10 10 0 6 0.00 6 11 0 10 0.00 10 12 0 14 0.00 14 13 0 10 0.00 10 14 0 12 0.00 12 15 0 8 0.00 8 16 1 13 7.14 14 17 0 6 0.00 6 18 0 9 0.00 9 19 0 5 0.00 5 20 0 13 0.00 13 21 0 10 0.00 10 22 0 7 0.00 7 23 0 9 0.00 9 24 0 10 0.00 10 25 1 3 25.00 4 26 0 7 0.00 7 27 0 5 0.00 5 28 0 6 0.00 6 29 1 10 9.09 11 30 0 8 0.00 8 31 0 9 0.00 9 32 0 7 0.00 7 33 0 4 0.00 4 34 0 5 0.00 5 35 0 5 0.00 5 36 0 7 0.00 7 37 0 8 0.00 8 38 0 0 0 39 0 5 0.00 5 40 0 10 0.00 10 41 0 4 0.00 4 42 0 4 0.00 4 43 0 2 0.00 2 44 0 4 0.00 4 45 0 4 0.00 4 46 0 9 0.00 9 47 0 8 0.00 8 48 0 6 0.00 6 49 0 4 0.00 4 50 0 5 0.00 5 51 0 4 0.00 4 52 0 4 0.00 4 53 0 7 0.00 7 54 0 1 0.00 1 55 0 7 0.00 7 56 0 3 0.00 3 57 1 2 33.33 3 58 0 3 0.00 3 59 0 3 0.00 3 60 0 4 0.00 4 61 0 0 0 62 1 3 25.00 4 63 0 4 0.00 4 64 0 2 0.00 2 65 0 2 0.00 2 66 0 4 0.00 4 67 0 5 0.00 5 68 0 4 0.00 4 69 0 4 0.00 4 70 0 0 0 71 0 4 0.00 4 72 0 2 0.00 2 73 0 5 0.00 5 74 0 0 0 75 0 8 0.00 8 76 0 4 0.00 4 77 0 3 0.00 3 78 0 3 0.00 3 79 0 3 0.00 3 80 0 0 0 81 0 4 0.00 4 82 0 2 0.00 2 83 0 2 0.00 2 84 0 6 0.00 6 85 0 1 0.00 1 86 0 3 0.00 3 87 0 1 0.00 1 88 0 4 0.00 4 89 0 2 0.00 2 90 0 4 0.00 4 91 0 1 0.00 1 92 0 1 0.00 1 93 0 5 0.00 5 94 0 4 0.00 4 95 0 0 0 96 0 3 0.00 3 97 0 6 0.00 6 98 0 5 0.00 5 99 0 3 0.00 3 100 0 3 0.00 3 101 0 5 0.00 5 102 0 3 0.00 3 103 0 3 0.00 3 104 0 3 0.00 3 105 0 3 0.00 3 106 0 3 0.00 3 107 0 2 0.00 2 108 0 1 0.00 1 109 0 1 0.00 1 110 0 0 0 111 0 0 0 112 0 5 0.00 5 113 0 4 0.00 4 114 0 0 0 115 0 4 0.00 4 116 0 1 0.00 1 117 0 1 0.00 1 118 0 2 0.00 2 119 0 1 0.00 1 120 1 1 50.00 2 121 0 0 0 122 0 2 0.00 2 123 0 2 0.00 2 124 0 2 0.00 2 125 0 1 0.00 1 126 0 5 0.00 5 127 0 1 0.00 1 128 0 2 0.00 2 129 1 0 100.00 1 130 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 11 15.38 13 2 1 19 5.00 20 3 0 21 0.00 21 4 4 8 33.33 12 5 0 11 0.00 11 6 2 12 14.29 14 7 0 13 0.00 13 8 0 20 0.00 20 9 0 22 0.00 22 10 0 17 0.00 17 11 0 10 0.00 10 12 0 18 0.00 18 13 1 15 6.25 16 14 0 10 0.00 10 15 1 9 10.00 10 16 0 9 0.00 9 17 0 10 0.00 10 18 0 11 0.00 11 19 0 17 0.00 17 20 0 10 0.00 10 21 0 20 0.00 20 22 0 8 0.00 8 23 0 9 0.00 9 24 0 10 0.00 10 25 0 11 0.00 11 26 0 11 0.00 11 27 1 13 7.14 14 28 0 15 0.00 15 29 0 8 0.00 8 30 0 10 0.00 10 31 0 8 0.00 8 32 0 9 0.00 9 33 0 9 0.00 9 34 0 9 0.00 9 35 0 13 0.00 13 36 0 11 0.00 11 37 0 7 0.00 7 38 0 6 0.00 6 39 0 16 0.00 16 40 0 10 0.00 10 41 0 17 0.00 17 42 1 13 7.14 14 43 0 13 0.00 13 44 0 7 0.00 7 45 0 8 0.00 8 46 0 7 0.00 7 47 0 12 0.00 12 48 0 8 0.00 8 49 0 10 0.00 10 50 0 13 0.00 13 51 0 5 0.00 5 52 0 5 0.00 5 53 0 7 0.00 7 54 0 9 0.00 9 55 0 9 0.00 9 56 0 7 0.00 7 57 0 7 0.00 7 58 0 8 0.00 8 59 0 8 0.00 8 60 0 8 0.00 8 61 1 10 9.09 11 62 1 8 11.11 9 63 0 5 0.00 5 64 0 3 0.00 3 65 0 7 0.00 7 66 0 5 0.00 5 67 0 3 0.00 3 68 0 11 0.00 11 69 0 6 0.00 6 70 0 7 0.00 7 71 0 11 0.00 11 72 0 10 0.00 10 73 0 7 0.00 7 74 0 6 0.00 6 75 0 6 0.00 6 76 0 6 0.00 6 77 0 4 0.00 4 78 0 10 0.00 10 79 0 4 0.00 4 80 0 2 0.00 2 81 0 5 0.00 5 82 0 7 0.00 7 83 0 4 0.00 4 84 0 8 0.00 8 85 0 3 0.00 3 86 0 7 0.00 7 87 1 2 33.33 3 88 0 2 0.00 2 89 0 5 0.00 5 90 0 4 0.00 4 91 0 7 0.00 7 92 1 6 14.29 7 93 0 9 0.00 9 94 0 4 0.00 4 95 0 5 0.00 5 96 0 6 0.00 6 97 0 5 0.00 5 98 0 2 0.00 2 99 0 1 0.00 1 100 0 3 0.00 3 101 0 6 0.00 6 102 0 3 0.00 3 103 0 3 0.00 3 104 0 4 0.00 4 105 0 3 0.00 3 106 0 1 0.00 1 107 0 3 0.00 3 108 0 5 0.00 5 109 0 3 0.00 3 110 0 4 0.00 4 111 0 1 0.00 1 112 0 2 0.00 2 113 0 3 0.00 3 114 0 2 0.00 2 115 0 3 0.00 3 116 0 0 0 117 0 3 0.00 3 118 0 3 0.00 3 119 0 3 0.00 3 120 0 5 0.00 5 121 0 5 0.00 5 122 0 6 0.00 6 123 0 7 0.00 7 124 0 2 0.00 2 125 0 2 0.00 2 126 0 2 0.00 2 127 0 2 0.00 2 128 0 3 0.00 3 129 0 1 0.00 1 130 0 2 0.00 2