Module Section Sample Name Source Bismark alignment Meth1_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/Meth1_R1_001_val_1_bismark_bt2_PE_report.txt Bismark alignment Meth4_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/Meth4_R1_001_val_1_bismark_bt2_PE_report.txt Bismark alignment Meth2_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/Meth2_R1_001_val_1_bismark_bt2_PE_report.txt Bismark alignment Meth7_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/Meth7_R1_001_val_1_bismark_bt2_PE_report.txt Bismark alignment Meth9_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/Meth9_R1_001_val_1_bismark_bt2_PE_report.txt Bismark alignment Meth5_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/Meth5_R1_001_val_1_bismark_bt2_PE_report.txt Bismark alignment Meth6_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/Meth6_R1_001_val_1_bismark_bt2_PE_report.txt Bismark alignment Meth8_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/Meth8_R1_001_val_1_bismark_bt2_PE_report.txt Bismark alignment Meth3_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/Meth3_R1_001_val_1_bismark_bt2_PE_report.txt Bismark deduplication Meth2_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth2_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt Bismark deduplication Meth1_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth1_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt Bismark deduplication Meth7_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth7_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt Bismark deduplication Meth8_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth8_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt Bismark deduplication Meth3_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth3_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt Bismark deduplication Meth9_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth9_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt Bismark methylation_extraction Meth5_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/nodedup/Meth5_R1_001_val_1_bismark_bt2_pe_splitting_report.txt Bismark methylation_extraction Meth4_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/nodedup/Meth4_R1_001_val_1_bismark_bt2_pe_splitting_report.txt Bismark methylation_extraction Meth6_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/nodedup/Meth6_R1_001_val_1_bismark_bt2_pe_splitting_report.txt Bismark methylation_extraction Meth8_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth8_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt Bismark methylation_extraction Meth3_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth3_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt Bismark methylation_extraction Meth2_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth2_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt Bismark methylation_extraction Meth1_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth1_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt Bismark methylation_extraction Meth7_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth7_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt Bismark methylation_extraction Meth9_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth9_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt Bismark m_bias Meth5_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/nodedup/Meth5_R1_001_val_1_bismark_bt2_pe.M-bias.txt Bismark m_bias Meth6_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/nodedup/Meth6_R1_001_val_1_bismark_bt2_pe.M-bias.txt Bismark m_bias Meth4_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/nodedup/Meth4_R1_001_val_1_bismark_bt2_pe.M-bias.txt Bismark m_bias Meth8_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth8_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt Bismark m_bias Meth3_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth3_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt Bismark m_bias Meth1_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth1_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt Bismark m_bias Meth9_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth9_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt Bismark m_bias Meth2_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth2_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt Bismark m_bias Meth7_R1_001_val_1 /gscratch/scrubbed/sr320/031520-TG-100g/Pact_tg/dedup/Meth7_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt