[2020-03-23 10:52:44,100] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2020-03-23 10:52:44,103] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/sr320/.multiqc_config.yaml [2020-03-23 10:52:44,103] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2020-03-23 10:52:44,103] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc -o Mcap-multiqc /gscratch/scrubbed/sr320/031520-TG-100g/Mcap_tg/ [2020-03-23 10:52:49,451] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2020-03-23 10:52:49,452] multiqc [INFO ] This is MultiQC v1.8 [2020-03-23 10:52:49,454] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc -o Mcap-multiqc /gscratch/scrubbed/sr320/031520-TG-100g/Mcap_tg/ [2020-03-23 10:52:49,454] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/sr320/032320-mqc [2020-03-23 10:52:49,454] multiqc [INFO ] Template : default [2020-03-23 10:52:49,454] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2020-03-23 10:52:49,455] multiqc [INFO ] Searching : /gscratch/scrubbed/sr320/031520-TG-100g/Mcap_tg [2020-03-23 10:52:49,456] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2020-03-23 10:52:49,456] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp7_vvn69c [2020-03-23 10:52:50,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth18_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth16_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth10_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,123] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth13_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,123] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth17_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,123] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth15_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,123] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth14_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth12_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth11_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth15_R1_001_val_1_bismark_bt2_pe.sorted.bam [2020-03-23 10:52:50,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth14_R1_001_val_1_bismark_bt2_pe.sorted.bam.bai [2020-03-23 10:52:50,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth13_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth15_R1_001_val_1_bismark_bt2_pe.sorted.bam.bai [2020-03-23 10:52:50,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth13_R1_001_val_1_bismark_bt2_pe.sorted.bam [2020-03-23 10:52:50,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth15_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth14_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth14_R1_001_val_1_bismark_bt2_pe.sorted.bam [2020-03-23 10:52:50,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth13_R1_001_val_1_bismark_bt2_pe.sorted.bam.bai [2020-03-23 10:52:50,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth18_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth16_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:50,278] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:50,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:50,279] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:50,279] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:50,279] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:50,279] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:50,279] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:50,279] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:53,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth10_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:53,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth16_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-03-23 10:52:53,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth18_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-03-23 10:52:53,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:52:53,745] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:52:53,745] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:52:53,745] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:52:53,745] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:52:53,745] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:52:53,755] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:52:54,367] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth10_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-03-23 10:52:54,367] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth10_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-03-23 10:52:54,414] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:54,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:54,415] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:54,415] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:54,415] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:54,415] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:54,426] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: Meth16_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:55,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth17_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:55,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth12_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:52:55,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth10_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-03-23 10:52:55,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:52:55,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:52:55,161] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:52:55,161] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:52:55,161] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:52:55,161] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:52:55,196] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:52:57,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth16_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-03-23 10:52:57,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth12_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-03-23 10:52:57,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth16_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-03-23 10:52:57,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:57,404] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:57,404] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:57,404] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:57,404] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:57,404] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:57,440] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._5x.tab [2020-03-23 10:52:59,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth11_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-03-23 10:52:59,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth12_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-03-23 10:52:59,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth17_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-03-23 10:52:59,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth12_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-03-23 10:52:59,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:59,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:59,820] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth18_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-03-23 10:52:59,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:59,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:59,888] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:59,888] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:59,888] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:52:59,888] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.bedgraph [2020-03-23 10:53:00,206] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth17_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-03-23 10:53:00,237] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:53:00,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Meth18_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:53:00,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:53:00,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:53:00,594] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:53:00,594] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:53:00,594] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:53:00,594] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:53:00,594] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:53:00,594] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._5x.bedgraph [2020-03-23 10:53:04,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:53:04,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:53:04,035] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:53:04,035] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:53:04,035] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:53:04,035] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: Meth17_R1_001_val_1_bismark_bt2_pe._10x.tab [2020-03-23 10:53:04,355] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth18_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-03-23 10:53:04,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth11_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-03-23 10:53:04,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth11_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-03-23 10:53:04,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth17_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-03-23 10:53:04,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Meth11_R1_001_val_1_bismark_bt2_pe.bam [2020-03-23 10:53:11,474] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2020-03-23 10:53:11,492] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2020-03-23 10:53:11,523] multiqc [DEBUG ] No samples found: custom_content [2020-03-23 10:53:11,575] multiqc [DEBUG ] No samples found: conpair [2020-03-23 10:53:11,700] multiqc [DEBUG ] No samples found: peddy [2020-03-23 10:53:11,753] multiqc [DEBUG ] No samples found: methylQA [2020-03-23 10:53:11,771] multiqc [DEBUG ] No samples found: phantompeakqualtools [2020-03-23 10:53:11,856] multiqc [DEBUG ] No samples found: qualimap [2020-03-23 10:53:11,907] multiqc [DEBUG ] No samples found: preseq [2020-03-23 10:53:11,942] multiqc [DEBUG ] No samples found: quast [2020-03-23 10:53:11,957] multiqc [DEBUG ] No samples found: qorts [2020-03-23 10:53:12,016] multiqc [DEBUG ] No samples found: rna_seqc [2020-03-23 10:53:12,101] multiqc [DEBUG ] No samples found: rsem [2020-03-23 10:53:12,218] multiqc [DEBUG ] No samples found: rseqc [2020-03-23 10:53:12,257] multiqc [DEBUG ] No samples found: busco [2020-03-23 10:53:12,292] multiqc [DEBUG ] No samples found: goleft_indexcov [2020-03-23 10:53:12,334] multiqc [DEBUG ] No samples found: disambiguate [2020-03-23 10:53:12,358] multiqc [DEBUG ] No samples found: supernova [2020-03-23 10:53:12,504] multiqc [DEBUG ] No samples found: deeptools [2020-03-23 10:53:12,549] multiqc [DEBUG ] No samples found: sargasso [2020-03-23 10:53:12,577] multiqc [DEBUG ] No samples found: verifybamid [2020-03-23 10:53:12,609] multiqc [DEBUG ] No samples found: mirtrace [2020-03-23 10:53:12,640] multiqc [DEBUG ] No samples found: happy [2020-03-23 10:53:12,692] multiqc [DEBUG ] No samples found: homer [2020-03-23 10:53:12,706] multiqc [DEBUG ] No samples found: macs2 [2020-03-23 10:53:12,717] multiqc [DEBUG ] No samples found: theta2 [2020-03-23 10:53:12,742] multiqc [DEBUG ] No samples found: snpeff [2020-03-23 10:53:12,816] multiqc [DEBUG ] No samples found: gatk [2020-03-23 10:53:12,830] multiqc [DEBUG ] No samples found: htseq [2020-03-23 10:53:12,901] multiqc [DEBUG ] No samples found: bcftools [2020-03-23 10:53:12,915] multiqc [DEBUG ] No samples found: featureCounts [2020-03-23 10:53:12,926] multiqc [DEBUG ] No samples found: fgbio [2020-03-23 10:53:12,934] multiqc [DEBUG ] No samples found: dedup [2020-03-23 10:53:12,957] multiqc [DEBUG ] No samples found: damageprofiler [2020-03-23 10:53:13,200] multiqc [DEBUG ] No samples found: biobambam2 [2020-03-23 10:53:13,213] multiqc [DEBUG ] No samples found: mtnucratio [2020-03-23 10:53:13,217] multiqc [DEBUG ] No samples found: picard [2020-03-23 10:53:13,242] multiqc [DEBUG ] No samples found: prokka [2020-03-23 10:53:13,255] multiqc [DEBUG ] No samples found: samblaster [2020-03-23 10:53:13,350] multiqc [DEBUG ] No samples found: samtools [2020-03-23 10:53:13,419] multiqc [DEBUG ] No samples found: sexdeterrmine [2020-03-23 10:53:13,473] multiqc [DEBUG ] No samples found: bamtools [2020-03-23 10:53:13,485] multiqc [DEBUG ] No samples found: jellyfish [2020-03-23 10:53:13,520] multiqc [DEBUG ] No samples found: vcftools [2020-03-23 10:53:13,546] multiqc [DEBUG ] No samples found: longranger [2020-03-23 10:53:13,591] multiqc [DEBUG ] No samples found: stacks [2020-03-23 10:53:13,696] multiqc [DEBUG ] No samples found: bbmap [2020-03-23 10:53:14,068] multiqc.modules.bismark.bismark [INFO ] Found 9 bismark alignment reports [2020-03-23 10:53:14,075] multiqc.modules.bismark.bismark [INFO ] Found 6 bismark dedup reports [2020-03-23 10:53:14,077] multiqc.modules.bismark.bismark [INFO ] Found 9 bismark methextract reports [2020-03-23 10:53:14,108] multiqc [DEBUG ] No samples found: biscuit [2020-03-23 10:53:14,135] multiqc [DEBUG ] No samples found: hicexplorer [2020-03-23 10:53:14,163] multiqc [DEBUG ] No samples found: hicup [2020-03-23 10:53:14,185] multiqc [DEBUG ] No samples found: hicpro [2020-03-23 10:53:14,197] multiqc [DEBUG ] No samples found: salmon [2020-03-23 10:53:14,221] multiqc [DEBUG ] No samples found: kallisto [2020-03-23 10:53:14,259] multiqc [DEBUG ] No samples found: slamdunk [2020-03-23 10:53:14,302] multiqc [DEBUG ] No samples found: star [2020-03-23 10:53:14,324] multiqc [DEBUG ] No samples found: hisat2 [2020-03-23 10:53:14,349] multiqc [DEBUG ] No samples found: tophat [2020-03-23 10:53:14,362] multiqc [DEBUG ] No samples found: bowtie2 [2020-03-23 10:53:14,382] multiqc [DEBUG ] No samples found: bowtie1 [2020-03-23 10:53:14,394] multiqc [DEBUG ] No samples found: kat [2020-03-23 10:53:14,403] multiqc [DEBUG ] No samples found: leehom [2020-03-23 10:53:14,443] multiqc [DEBUG ] No samples found: adapterRemoval [2020-03-23 10:53:14,455] multiqc [DEBUG ] No samples found: clipandmerge [2020-03-23 10:53:14,488] multiqc [DEBUG ] No samples found: cutadapt [2020-03-23 10:53:14,501] multiqc [DEBUG ] No samples found: flexbar [2020-03-23 10:53:14,518] multiqc [DEBUG ] No samples found: trimmomatic [2020-03-23 10:53:14,549] multiqc [DEBUG ] No samples found: skewer [2020-03-23 10:53:14,562] multiqc [DEBUG ] No samples found: sortmerna [2020-03-23 10:53:14,585] multiqc [DEBUG ] No samples found: biobloomtools [2020-03-23 10:53:14,623] multiqc [DEBUG ] No samples found: fastq_screen [2020-03-23 10:53:14,655] multiqc [DEBUG ] No samples found: afterqc [2020-03-23 10:53:14,690] multiqc [DEBUG ] No samples found: fastp [2020-03-23 10:53:14,716] multiqc [DEBUG ] No samples found: fastqc [2020-03-23 10:53:14,750] multiqc [DEBUG ] No samples found: minionqc [2020-03-23 10:53:14,771] multiqc [DEBUG ] No samples found: mosdepth [2020-03-23 10:53:14,797] multiqc [DEBUG ] No samples found: clusterflow [2020-03-23 10:53:14,824] multiqc [DEBUG ] No samples found: bcl2fastq [2020-03-23 10:53:14,849] multiqc [DEBUG ] No samples found: interop [2020-03-23 10:53:14,862] multiqc [DEBUG ] No samples found: flash [2020-03-23 10:53:14,891] multiqc [DEBUG ] No samples found: seqyclean [2020-03-23 10:53:14,919] multiqc [INFO ] Compressing plot data [2020-03-23 10:53:15,016] multiqc [INFO ] Report : Mcap-multiqc/multiqc_report.html [2020-03-23 10:53:15,017] multiqc [INFO ] Data : Mcap-multiqc/multiqc_data [2020-03-23 10:53:15,017] multiqc [DEBUG ] Moving data file from '/tmp/tmp7_vvn69c/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to 'Mcap-multiqc/multiqc_data' [2020-03-23 10:53:15,018] multiqc [DEBUG ] Moving data file from '/tmp/tmp7_vvn69c/multiqc_data/multiqc_bismark_alignment.txt' to 'Mcap-multiqc/multiqc_data' [2020-03-23 10:53:15,019] multiqc [DEBUG ] Moving data file from '/tmp/tmp7_vvn69c/multiqc_data/multiqc_bismark_dedup.txt' to 'Mcap-multiqc/multiqc_data' [2020-03-23 10:53:15,020] multiqc [DEBUG ] Moving data file from '/tmp/tmp7_vvn69c/multiqc_data/multiqc_bismark_methextract.txt' to 'Mcap-multiqc/multiqc_data' [2020-03-23 10:53:15,021] multiqc [DEBUG ] Moving data file from '/tmp/tmp7_vvn69c/multiqc_data/multiqc_general_stats.txt' to 'Mcap-multiqc/multiqc_data' [2020-03-23 10:53:15,022] multiqc [DEBUG ] Moving data file from '/tmp/tmp7_vvn69c/multiqc_data/multiqc_sources.txt' to 'Mcap-multiqc/multiqc_data' [2020-03-23 10:53:15,023] multiqc [DEBUG ] Moving data file from '/tmp/tmp7_vvn69c/multiqc_data/multiqc_data.json' to 'Mcap-multiqc/multiqc_data' [2020-03-23 10:53:15,989] multiqc [INFO ] MultiQC complete