EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4031044 lines in total Total number of methylation call strings processed: 8062088 Final Cytosine Methylation Report ================================= Total number of C's analysed: 79983322 Total methylated C's in CpG context: 3855731 Total methylated C's in CHG context: 431899 Total methylated C's in CHH context: 1321843 Total C to T conversions in CpG context: 7250942 Total C to T conversions in CHG context: 16319796 Total C to T conversions in CHH context: 50803111 C methylated in CpG context: 34.7% C methylated in CHG context: 2.6% C methylated in CHH context: 2.5%