CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 118550 137046 46.38 255596 2 113979 149997 43.18 263976 3 110423 137646 44.51 248069 4 115339 119259 49.16 234598 5 113686 106304 51.68 219990 6 112645 87709 56.22 200354 7 126510 87741 59.05 214251 8 58913 101220 36.79 160133 9 52160 93364 35.84 145524 10 52795 91069 36.70 143864 11 55175 93101 37.21 148276 12 54830 93844 36.88 148674 13 53369 94738 36.03 148107 14 50861 96739 34.46 147600 15 50308 97659 34.00 147967 16 46955 97568 32.49 144523 17 44237 94590 31.86 138827 18 45929 96528 32.24 142457 19 44411 96734 31.46 141145 20 44861 98435 31.31 143296 21 45341 99199 31.37 144540 22 44927 97174 31.62 142101 23 44699 97088 31.53 141787 24 44429 96799 31.46 141228 25 43716 95657 31.37 139373 26 43646 95610 31.34 139256 27 43069 97566 30.62 140635 28 44973 97775 31.51 142748 29 43586 96240 31.17 139826 30 42892 96612 30.75 139504 31 43723 95343 31.44 139066 32 43097 93009 31.66 136106 33 42700 94184 31.19 136884 34 43995 94414 31.79 138409 35 43116 93756 31.50 136872 36 42237 94151 30.97 136388 37 40556 91537 30.70 132093 38 40466 91101 30.76 131567 39 41615 91869 31.18 133484 40 41463 90697 31.37 132160 41 40795 91207 30.90 132002 42 41703 93152 30.92 134855 43 40999 90451 31.19 131450 44 40216 89475 31.01 129691 45 40781 89119 31.39 129900 46 41287 89916 31.47 131203 47 40553 87506 31.67 128059 48 39636 86919 31.32 126555 49 41154 87908 31.89 129062 50 39457 87444 31.09 126901 51 39469 87091 31.19 126560 52 39850 88739 30.99 128589 53 38683 84861 31.31 123544 54 37665 83814 31.01 121479 55 37528 82442 31.28 119970 56 36935 81704 31.13 118639 57 37432 82470 31.22 119902 58 37295 82070 31.24 119365 59 37611 81007 31.71 118618 60 36085 81069 30.80 117154 61 36418 79568 31.40 115986 62 35989 79028 31.29 115017 63 34830 79108 30.57 113938 64 34409 77973 30.62 112382 65 34375 78389 30.48 112764 66 35365 77742 31.27 113107 67 34699 76404 31.23 111103 68 33533 75938 30.63 109471 69 33209 75186 30.64 108395 70 33077 74336 30.79 107413 71 31885 71994 30.69 103879 72 31786 72489 30.48 104275 73 31218 71126 30.50 102344 74 30989 70629 30.50 101618 75 30301 70636 30.02 100937 76 30154 69735 30.19 99889 77 30560 68593 30.82 99153 78 30583 70109 30.37 100692 79 30203 68417 30.63 98620 80 29339 67934 30.16 97273 81 28605 67315 29.82 95920 82 27936 66045 29.73 93981 83 29085 66637 30.38 95722 84 28516 66135 30.13 94651 85 28109 65132 30.15 93241 86 27229 64268 29.76 91497 87 26594 62769 29.76 89363 88 26619 63007 29.70 89626 89 26249 62049 29.73 88298 90 26132 62180 29.59 88312 91 25520 60724 29.59 86244 92 25141 60107 29.49 85248 93 25335 60284 29.59 85619 94 25150 59731 29.63 84881 95 24578 58756 29.49 83334 96 24641 59264 29.37 83905 97 23900 56796 29.62 80696 98 22321 53858 29.30 76179 99 17984 42742 29.61 60726 100 22932 52932 30.23 75864 101 21229 52190 28.91 73419 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 142738 201995 41.41 344733 2 84124 193200 30.33 277324 3 34528 192355 15.22 226883 4 20037 193983 9.36 214020 5 13134 171393 7.12 184527 6 12892 161499 7.39 174391 7 7564 209243 3.49 216807 8 3485 227820 1.51 231305 9 2855 217397 1.30 220252 10 2824 209511 1.33 212335 11 3069 211380 1.43 214449 12 3066 206684 1.46 209750 13 2554 202032 1.25 204586 14 2424 203496 1.18 205920 15 2366 208315 1.12 210681 16 2150 207691 1.02 209841 17 2169 205895 1.04 208064 18 2062 203707 1.00 205769 19 2003 204130 0.97 206133 20 2170 216053 0.99 218223 21 2206 217974 1.00 220180 22 2409 215596 1.11 218005 23 2424 218058 1.10 220482 24 2389 217975 1.08 220364 25 2445 212898 1.14 215343 26 2952 213705 1.36 216657 27 2406 215912 1.10 218318 28 2262 215202 1.04 217464 29 2612 217463 1.19 220075 30 2447 218234 1.11 220681 31 2348 212800 1.09 215148 32 2257 214190 1.04 216447 33 2486 215851 1.14 218337 34 2530 211455 1.18 213985 35 2816 211904 1.31 214720 36 2515 211574 1.17 214089 37 2426 205089 1.17 207515 38 2780 209434 1.31 212214 39 2462 206227 1.18 208689 40 2376 206512 1.14 208888 41 2332 206500 1.12 208832 42 2523 205598 1.21 208121 43 2342 201266 1.15 203608 44 2450 203467 1.19 205917 45 2545 202435 1.24 204980 46 2590 199996 1.28 202586 47 2880 198699 1.43 201579 48 2404 203211 1.17 205615 49 2479 197840 1.24 200319 50 2935 194906 1.48 197841 51 2550 197687 1.27 200237 52 2572 196642 1.29 199214 53 2591 192393 1.33 194984 54 2578 193624 1.31 196202 55 2602 190716 1.35 193318 56 2600 191933 1.34 194533 57 2800 189460 1.46 192260 58 2512 187171 1.32 189683 59 2585 187539 1.36 190124 60 2493 186634 1.32 189127 61 2654 183617 1.42 186271 62 2752 184095 1.47 186847 63 2515 181693 1.37 184208 64 2538 180805 1.38 183343 65 3012 180391 1.64 183403 66 2522 176204 1.41 178726 67 2455 171597 1.41 174052 68 2749 171844 1.57 174593 69 2340 170368 1.35 172708 70 2298 167769 1.35 170067 71 2253 167104 1.33 169357 72 2240 165441 1.34 167681 73 2193 164989 1.31 167182 74 2497 164025 1.50 166522 75 2172 163381 1.31 165553 76 2079 158043 1.30 160122 77 2455 158869 1.52 161324 78 2163 155540 1.37 157703 79 2179 152770 1.41 154949 80 2099 151759 1.36 153858 81 2196 150148 1.44 152344 82 2044 147452 1.37 149496 83 2184 149794 1.44 151978 84 2097 149153 1.39 151250 85 2119 146981 1.42 149100 86 2167 146044 1.46 148211 87 2051 147393 1.37 149444 88 2315 142893 1.59 145208 89 2090 142497 1.45 144587 90 2037 142124 1.41 144161 91 1985 139894 1.40 141879 92 2081 140752 1.46 142833 93 2186 138964 1.55 141150 94 2110 136411 1.52 138521 95 2132 133680 1.57 135812 96 2057 133233 1.52 135290 97 2082 121965 1.68 124047 98 1968 110761 1.75 112729 99 1179 73829 1.57 75008 100 1414 74622 1.86 76036 101 2937 118931 2.41 121868 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 177616 267637 39.89 445253 2 97969 293118 25.05 391087 3 52321 342002 13.27 394323 4 46165 356552 11.46 402717 5 45009 422460 9.63 467469 6 36852 466723 7.32 503575 7 26368 604863 4.18 631231 8 19977 657855 2.95 677832 9 14522 605219 2.34 619741 10 14384 583285 2.41 597669 11 18144 587112 3.00 605256 12 14754 592999 2.43 607753 13 16775 605577 2.70 622352 14 19145 619426 3.00 638571 15 15882 636126 2.44 652008 16 15472 639952 2.36 655424 17 18813 644798 2.83 663611 18 15810 671807 2.30 687617 19 15338 682180 2.20 697518 20 18431 703785 2.55 722216 21 15501 704893 2.15 720394 22 17098 704195 2.37 721293 23 18836 703130 2.61 721966 24 16067 702437 2.24 718504 25 17331 703206 2.41 720537 26 19423 708407 2.67 727830 27 16217 710539 2.23 726756 28 15803 712508 2.17 728311 29 19119 709770 2.62 728889 30 15961 697810 2.24 713771 31 16641 688025 2.36 704666 32 17975 689110 2.54 707085 33 15823 686977 2.25 702800 34 17773 689505 2.51 707278 35 18796 681807 2.68 700603 36 16048 686816 2.28 702864 37 15380 677560 2.22 692940 38 18438 676856 2.65 695294 39 15551 667804 2.28 683355 40 15230 664815 2.24 680045 41 18290 668180 2.66 686470 42 15851 666410 2.32 682261 43 17130 658412 2.54 675542 44 18227 661186 2.68 679413 45 15884 652441 2.38 668325 46 15605 651244 2.34 666849 47 17926 645378 2.70 663304 48 14625 642338 2.23 656963 49 15143 633552 2.33 648695 50 17684 625652 2.75 643336 51 14582 620096 2.30 634678 52 15622 614423 2.48 630045 53 17508 607046 2.80 624554 54 14848 607192 2.39 622040 55 15068 600166 2.45 615234 56 17336 598528 2.81 615864 57 14873 598359 2.43 613232 58 14711 597200 2.40 611911 59 17052 597037 2.78 614089 60 13629 587806 2.27 601435 61 15003 583357 2.51 598360 62 16131 574258 2.73 590389 63 13821 572578 2.36 586399 64 15128 564904 2.61 580032 65 16024 562411 2.77 578435 66 13406 557209 2.35 570615 67 13529 553610 2.39 567139 68 15672 548632 2.78 564304 69 12672 545577 2.27 558249 70 13347 539500 2.41 552847 71 14902 537477 2.70 552379 72 12882 536186 2.35 549068 73 14543 525473 2.69 540016 74 14953 524777 2.77 539730 75 12579 520643 2.36 533222 76 12647 516937 2.39 529584 77 15141 512120 2.87 527261 78 11746 507374 2.26 519120 79 12380 503807 2.40 516187 80 14401 497620 2.81 512021 81 12843 490521 2.55 503364 82 13217 486734 2.64 499951 83 14496 487882 2.89 502378 84 12214 480661 2.48 492875 85 11932 473039 2.46 484971 86 13629 467766 2.83 481395 87 11609 464942 2.44 476551 88 12500 456409 2.67 468909 89 13718 455788 2.92 469506 90 11097 452939 2.39 464036 91 11932 448002 2.59 459934 92 12513 444930 2.74 457443 93 10743 439809 2.38 450552 94 11083 433988 2.49 445071 95 12885 428645 2.92 441530 96 10097 421716 2.34 431813 97 10256 409549 2.44 419805 98 11083 378540 2.84 389623 99 6567 265043 2.42 271610 100 7691 236620 3.15 244311 101 11078 376517 2.86 387595 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 83141 79716 51.05 162857 2 70331 65584 51.75 135915 3 76444 74600 50.61 151044 4 69479 83056 45.55 152535 5 31528 106710 22.81 138238 6 19139 58519 24.65 77658 7 16438 60702 21.31 77140 8 17005 55372 23.50 72377 9 15338 48989 23.84 64327 10 16343 53386 23.44 69729 11 17795 52501 25.31 70296 12 17144 49829 25.60 66973 13 17465 48772 26.37 66237 14 18440 49880 26.99 68320 15 18148 46640 28.01 64788 16 16645 43939 27.47 60584 17 20178 48105 29.55 68283 18 19736 48083 29.10 67819 19 18781 46303 28.86 65084 20 17246 43925 28.19 61171 21 18331 42618 30.08 60949 22 18213 43745 29.40 61958 23 17038 41974 28.87 59012 24 15958 40111 28.46 56069 25 17714 42420 29.46 60134 26 16102 39698 28.86 55800 27 17388 39999 30.30 57387 28 16160 38707 29.45 54867 29 16943 40125 29.69 57068 30 16168 37486 30.13 53654 31 15447 38072 28.86 53519 32 14888 36209 29.14 51097 33 17471 37387 31.85 54858 34 16276 39143 29.37 55419 35 19197 41976 31.38 61173 36 16239 36616 30.72 52855 37 16844 38102 30.66 54946 38 14921 35752 29.45 50673 39 15495 35677 30.28 51172 40 16859 35954 31.92 52813 41 15125 35189 30.06 50314 42 14904 36824 28.81 51728 43 14591 34814 29.53 49405 44 14123 34158 29.25 48281 45 17581 38329 31.45 55910 46 13761 31390 30.48 45151 47 13710 31830 30.11 45540 48 14005 32506 30.11 46511 49 13647 32925 29.30 46572 50 12849 30856 29.40 43705 51 12725 30132 29.69 42857 52 13078 30746 29.84 43824 53 13137 30251 30.28 43388 54 13044 30573 29.91 43617 55 13099 30375 30.13 43474 56 12123 29195 29.34 41318 57 12764 30327 29.62 43091 58 12288 29067 29.71 41355 59 12030 27680 30.29 39710 60 12118 28333 29.96 40451 61 10998 27084 28.88 38082 62 11269 26780 29.62 38049 63 12211 27166 31.01 39377 64 11352 26493 30.00 37845 65 11264 24990 31.07 36254 66 11796 26086 31.14 37882 67 10802 27312 28.34 38114 68 11903 27741 30.02 39644 69 10431 24221 30.10 34652 70 10373 24490 29.75 34863 71 10665 24099 30.68 34764 72 10078 23189 30.29 33267 73 10200 23811 29.99 34011 74 9154 22617 28.81 31771 75 9256 22557 29.10 31813 76 9520 21964 30.24 31484 77 9107 21793 29.47 30900 78 9254 22039 29.57 31293 79 8945 21517 29.36 30462 80 8830 21186 29.42 30016 81 8753 21000 29.42 29753 82 8850 21189 29.46 30039 83 8877 20527 30.19 29404 84 9788 23000 29.85 32788 85 8310 20597 28.75 28907 86 8293 20150 29.16 28443 87 8158 19674 29.31 27832 88 8458 19497 30.26 27955 89 8762 20486 29.96 29248 90 8621 19911 30.22 28532 91 8044 19192 29.53 27236 92 7881 18809 29.53 26690 93 7921 18589 29.88 26510 94 8229 19092 30.12 27321 95 7830 18451 29.79 26281 96 7749 18890 29.09 26639 97 8489 19841 29.96 28330 98 7530 16894 30.83 24424 99 6471 0 100.00 6471 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20960 102169 17.02 123129 2 20548 101728 16.80 122276 3 18762 102934 15.42 121696 4 20331 112574 15.30 132905 5 2271 205566 1.09 207837 6 1624 252441 0.64 254065 7 1043 139758 0.74 140801 8 1069 147309 0.72 148378 9 948 121197 0.78 122145 10 1013 116482 0.86 117495 11 1386 157952 0.87 159338 12 1074 126377 0.84 127451 13 1022 124904 0.81 125926 14 981 118066 0.82 119047 15 1047 112400 0.92 113447 16 903 105932 0.85 106835 17 1035 112841 0.91 113876 18 1317 100785 1.29 102102 19 950 98346 0.96 99296 20 887 97689 0.90 98576 21 1301 93595 1.37 94896 22 993 102581 0.96 103574 23 1023 102101 0.99 103124 24 801 90603 0.88 91404 25 806 92163 0.87 92969 26 1031 96983 1.05 98014 27 926 90624 1.01 91550 28 762 86932 0.87 87694 29 859 93607 0.91 94466 30 770 90499 0.84 91269 31 727 84808 0.85 85535 32 761 86738 0.87 87499 33 834 104731 0.79 105565 34 767 85514 0.89 86281 35 808 88935 0.90 89743 36 786 89895 0.87 90681 37 635 81366 0.77 82001 38 776 86546 0.89 87322 39 728 79482 0.91 80210 40 727 80649 0.89 81376 41 700 77517 0.89 78217 42 750 73443 1.01 74193 43 631 76376 0.82 77007 44 699 74928 0.92 75627 45 638 71126 0.89 71764 46 659 71972 0.91 72631 47 685 72876 0.93 73561 48 699 70243 0.99 70942 49 696 73495 0.94 74191 50 689 70544 0.97 71233 51 673 66898 1.00 67571 52 657 65442 0.99 66099 53 711 73152 0.96 73863 54 634 67293 0.93 67927 55 644 65963 0.97 66607 56 673 65956 1.01 66629 57 777 63211 1.21 63988 58 597 62146 0.95 62743 59 602 63795 0.93 64397 60 707 63773 1.10 64480 61 511 62663 0.81 63174 62 643 64332 0.99 64975 63 594 62514 0.94 63108 64 475 58911 0.80 59386 65 616 60266 1.01 60882 66 529 56914 0.92 57443 67 552 61665 0.89 62217 68 538 59126 0.90 59664 69 530 58665 0.90 59195 70 466 58515 0.79 58981 71 469 59523 0.78 59992 72 420 55644 0.75 56064 73 446 54062 0.82 54508 74 468 56281 0.82 56749 75 426 53197 0.79 53623 76 429 51647 0.82 52076 77 456 54636 0.83 55092 78 430 51202 0.83 51632 79 430 51192 0.83 51622 80 426 50284 0.84 50710 81 398 49122 0.80 49520 82 386 47672 0.80 48058 83 435 48090 0.90 48525 84 416 47328 0.87 47744 85 425 52708 0.80 53133 86 365 46833 0.77 47198 87 402 47085 0.85 47487 88 395 44930 0.87 45325 89 395 46909 0.84 47304 90 465 46801 0.98 47266 91 430 48685 0.88 49115 92 356 45243 0.78 45599 93 390 43420 0.89 43810 94 358 43004 0.83 43362 95 448 43972 1.01 44420 96 426 42065 1.00 42491 97 404 41492 0.96 41896 98 342 40743 0.83 41085 99 297 0 100.00 297 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30694 129784 19.13 160478 2 26433 105305 20.06 131738 3 27488 109502 20.07 136990 4 26165 108372 19.45 134537 5 6455 221767 2.83 228222 6 7155 302164 2.31 309319 7 7089 416633 1.67 423722 8 7687 408653 1.85 416340 9 8508 384497 2.16 393005 10 7587 394479 1.89 402066 11 7976 386777 2.02 394753 12 7944 362741 2.14 370685 13 7446 376437 1.94 383883 14 6981 375263 1.83 382244 15 7144 388559 1.81 395703 16 6695 373342 1.76 380037 17 6829 369522 1.81 376351 18 7124 369017 1.89 376141 19 6416 341494 1.84 347910 20 6724 362775 1.82 369499 21 7029 343355 2.01 350384 22 6714 329622 2.00 336336 23 6212 325708 1.87 331920 24 6081 313191 1.90 319272 25 6520 311626 2.05 318146 26 6107 309468 1.94 315575 27 6984 336250 2.03 343234 28 5940 316259 1.84 322199 29 5940 308867 1.89 314807 30 6454 301473 2.10 307927 31 5731 295726 1.90 301457 32 5914 286658 2.02 292572 33 5940 285050 2.04 290990 34 5904 282869 2.04 288773 35 6215 293956 2.07 300171 36 5573 289657 1.89 295230 37 5298 287741 1.81 293039 38 5785 303197 1.87 308982 39 5759 273646 2.06 279405 40 5252 290901 1.77 296153 41 5532 271406 2.00 276938 42 5509 280423 1.93 285932 43 5301 266439 1.95 271740 44 5131 262470 1.92 267601 45 5490 264984 2.03 270474 46 4879 268220 1.79 273099 47 4914 260140 1.85 265054 48 5249 254123 2.02 259372 49 4733 262415 1.77 267148 50 4986 255709 1.91 260695 51 4968 250970 1.94 255938 52 4591 239627 1.88 244218 53 4410 237035 1.83 241445 54 4150 231973 1.76 236123 55 4254 241383 1.73 245637 56 4595 231315 1.95 235910 57 4295 241654 1.75 245949 58 3956 230478 1.69 234434 59 4197 221226 1.86 225423 60 4314 228753 1.85 233067 61 4082 219527 1.83 223609 62 4045 216895 1.83 220940 63 3998 219184 1.79 223182 64 3937 210446 1.84 214383 65 3662 214634 1.68 218296 66 3978 205665 1.90 209643 67 3593 207706 1.70 211299 68 3791 215443 1.73 219234 69 4024 209313 1.89 213337 70 3406 198553 1.69 201959 71 3661 197339 1.82 201000 72 3611 197112 1.80 200723 73 3563 195021 1.79 198584 74 3376 195062 1.70 198438 75 3313 192859 1.69 196172 76 3202 185929 1.69 189131 77 3473 185116 1.84 188589 78 3566 186503 1.88 190069 79 3190 190417 1.65 193607 80 3385 182612 1.82 185997 81 3469 182737 1.86 186206 82 3252 179126 1.78 182378 83 3315 178489 1.82 181804 84 3357 175666 1.88 179023 85 3046 174653 1.71 177699 86 3084 173182 1.75 176266 87 3168 171686 1.81 174854 88 2828 165096 1.68 167924 89 2984 164195 1.78 167179 90 3078 164001 1.84 167079 91 3031 163130 1.82 166161 92 2704 161179 1.65 163883 93 2716 159703 1.67 162419 94 2649 159652 1.63 162301 95 2665 155565 1.68 158230 96 2542 152204 1.64 154746 97 2344 151943 1.52 154287 98 2216 144848 1.51 147064 99 1584 0 100.00 1584