/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-41_S38_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-41_S38_L005_R2_001_val_2.fq.gz
Data processed at 23:49 on 2020-03-24
Alignment Stats
Sequence pairs analysed in total
25055317
Paired-end alignments with a unique best hit
10110534
Pairs without alignments under any condition
12402840
Pairs that did not map uniquely
2541943
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
290510503
Methylated C's in CpG context
12940226
Methylated C's in CHG context
1543391
Methylated C's in CHH context
4910085
Methylated C's in Unknown context
96039
Unmethylated C's in CpG context
28119492
Unmethylated C's in CHG context
60698341
Unmethylated C's in CHH context
182298968
Unmethylated C's in Unknown context
604385
Percentage methylation (CpG context)
31.5%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4993663
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5116869
original bottom strand
Deduplication
Alignments analysed
10110532
Unique alignments
6399320
Duplicates removed
3711212
Duplicated alignments were found at 2206337 different positions