EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4911622 lines in total Total number of methylation call strings processed: 9823244 Final Cytosine Methylation Report ================================= Total number of C's analysed: 96701418 Total methylated C's in CpG context: 4236787 Total methylated C's in CHG context: 538030 Total methylated C's in CHH context: 1814920 Total C to T conversions in CpG context: 9099073 Total C to T conversions in CHG context: 19735564 Total C to T conversions in CHH context: 61277044 C methylated in CpG context: 31.8% C methylated in CHG context: 2.7% C methylated in CHH context: 2.9%