CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 84768 124351 40.54 209119 2 81183 137948 37.05 219131 3 78396 120970 39.32 199366 4 81898 97466 45.66 179364 5 78974 84531 48.30 163505 6 80645 70013 53.53 150658 7 89834 71710 55.61 161544 8 43474 78301 35.70 121775 9 38527 72371 34.74 110898 10 38524 70765 35.25 109289 11 40420 72817 35.70 113237 12 39412 73525 34.90 112937 13 38716 75810 33.81 114526 14 37459 76221 32.95 113680 15 36648 77033 32.24 113681 16 34355 76746 30.92 111101 17 33033 74825 30.63 107858 18 33691 76331 30.62 110022 19 33093 76678 30.15 109771 20 33519 77480 30.20 110999 21 33375 78620 29.80 111995 22 33085 77064 30.04 110149 23 32865 76441 30.07 109306 24 32687 76778 29.86 109465 25 32138 75999 29.72 108137 26 32484 75419 30.10 107903 27 32162 77370 29.36 109532 28 32919 76032 30.21 108951 29 32151 76747 29.52 108898 30 31519 76651 29.14 108170 31 32653 74105 30.59 106758 32 31457 73305 30.03 104762 33 31702 73427 30.16 105129 34 32236 72972 30.64 105208 35 31711 72861 30.32 104572 36 31102 73403 29.76 104505 37 30494 71815 29.81 102309 38 29980 71161 29.64 101141 39 30860 72847 29.76 103707 40 30684 70831 30.23 101515 41 30585 70369 30.30 100954 42 31122 71782 30.24 102904 43 30528 70228 30.30 100756 44 29837 69309 30.09 99146 45 30287 69003 30.50 99290 46 30192 69696 30.23 99888 47 29535 67750 30.36 97285 48 29262 68173 30.03 97435 49 29756 67809 30.50 97565 50 28595 68250 29.53 96845 51 28932 67477 30.01 96409 52 29394 68855 29.92 98249 53 28116 66011 29.87 94127 54 27712 65101 29.86 92813 55 27332 62964 30.27 90296 56 27299 62943 30.25 90242 57 27188 62793 30.22 89981 58 27103 62823 30.14 89926 59 26910 62068 30.24 88978 60 26539 61916 30.00 88455 61 26483 60644 30.40 87127 62 25791 61160 29.66 86951 63 25218 60185 29.53 85403 64 25034 59973 29.45 85007 65 25195 59140 29.87 84335 66 25463 59298 30.04 84761 67 24684 57466 30.05 82150 68 24546 57151 30.05 81697 69 24300 56786 29.97 81086 70 23705 56352 29.61 80057 71 23377 55312 29.71 78689 72 23151 54625 29.77 77776 73 22589 53887 29.54 76476 74 22486 53391 29.63 75877 75 22098 53266 29.32 75364 76 21949 51902 29.72 73851 77 21964 52061 29.67 74025 78 22079 51915 29.84 73994 79 21691 51156 29.78 72847 80 21244 50848 29.47 72092 81 20735 50749 29.01 71484 82 20395 49688 29.10 70083 83 20764 49914 29.38 70678 84 20354 49923 28.96 70277 85 20181 49196 29.09 69377 86 19934 47821 29.42 67755 87 19453 47320 29.13 66773 88 19107 47480 28.69 66587 89 18861 46693 28.77 65554 90 18854 46246 28.96 65100 91 18513 45537 28.90 64050 92 18153 44894 28.79 63047 93 18534 45306 29.03 63840 94 18100 44589 28.87 62689 95 17734 44148 28.66 61882 96 18007 44853 28.65 62860 97 17071 43165 28.34 60236 98 16315 40477 28.73 56792 99 12689 31695 28.59 44384 100 16576 40298 29.15 56874 101 15845 40478 28.13 56323 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 112932 160686 41.27 273618 2 65831 153461 30.02 219292 3 27898 148736 15.79 176634 4 15195 149413 9.23 164608 5 9824 135690 6.75 145514 6 10317 130032 7.35 140349 7 5990 162085 3.56 168075 8 2802 174889 1.58 177691 9 2359 168316 1.38 170675 10 2250 163285 1.36 165535 11 2382 164567 1.43 166949 12 2256 162603 1.37 164859 13 2130 158277 1.33 160407 14 1927 157972 1.21 159899 15 1994 162472 1.21 164466 16 1742 162292 1.06 164034 17 1785 160016 1.10 161801 18 1678 159725 1.04 161403 19 1632 158957 1.02 160589 20 1846 167425 1.09 169271 21 1846 168585 1.08 170431 22 1981 166606 1.18 168587 23 1901 168950 1.11 170851 24 1888 168930 1.11 170818 25 1845 165629 1.10 167474 26 2193 165507 1.31 167700 27 1884 166994 1.12 168878 28 1854 167037 1.10 168891 29 2097 168144 1.23 170241 30 1899 169229 1.11 171128 31 2040 163619 1.23 165659 32 2054 165552 1.23 167606 33 2114 165912 1.26 168026 34 2085 163621 1.26 165706 35 2244 162775 1.36 165019 36 2049 162983 1.24 165032 37 1995 158621 1.24 160616 38 2222 160190 1.37 162412 39 2047 159868 1.26 161915 40 1971 158811 1.23 160782 41 2043 158247 1.27 160290 42 2090 157205 1.31 159295 43 1891 154559 1.21 156450 44 2038 155627 1.29 157665 45 2043 155158 1.30 157201 46 2134 152356 1.38 154490 47 2118 152130 1.37 154248 48 2038 154943 1.30 156981 49 2079 150421 1.36 152500 50 2171 149615 1.43 151786 51 2031 150255 1.33 152286 52 2022 149538 1.33 151560 53 2065 146147 1.39 148212 54 2167 147234 1.45 149401 55 2086 144481 1.42 146567 56 2103 145044 1.43 147147 57 2106 144244 1.44 146350 58 1978 141829 1.38 143807 59 2041 142471 1.41 144512 60 2009 141156 1.40 143165 61 2058 138798 1.46 140856 62 2096 139176 1.48 141272 63 2094 137299 1.50 139393 64 2060 136996 1.48 139056 65 2257 135680 1.64 137937 66 1993 131889 1.49 133882 67 1958 128943 1.50 130901 68 2064 130607 1.56 132671 69 1834 128997 1.40 130831 70 1775 126825 1.38 128600 71 1829 125904 1.43 127733 72 1708 124931 1.35 126639 73 1840 123530 1.47 125370 74 1999 122655 1.60 124654 75 1753 121578 1.42 123331 76 1672 118311 1.39 119983 77 1932 118744 1.60 120676 78 1641 117252 1.38 118893 79 1739 114280 1.50 116019 80 1648 113995 1.43 115643 81 1618 112461 1.42 114079 82 1680 111012 1.49 112692 83 1712 111655 1.51 113367 84 1640 111791 1.45 113431 85 1586 110046 1.42 111632 86 1717 110174 1.53 111891 87 1582 109760 1.42 111342 88 1587 107907 1.45 109494 89 1595 105859 1.48 107454 90 1537 105794 1.43 107331 91 1530 104447 1.44 105977 92 1604 104897 1.51 106501 93 1687 103275 1.61 104962 94 1634 100616 1.60 102250 95 1566 100253 1.54 101819 96 1671 99201 1.66 100872 97 1618 90454 1.76 92072 98 1446 83365 1.70 84811 99 884 54359 1.60 55243 100 1044 54632 1.88 55676 101 2270 91211 2.43 93481 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 129493 216175 37.46 345668 2 69095 232972 22.87 302067 3 38083 271980 12.28 310063 4 33127 290304 10.24 323431 5 32200 344724 8.54 376924 6 26172 372792 6.56 398964 7 20732 471191 4.21 491923 8 15267 509188 2.91 524455 9 11280 470812 2.34 482092 10 11005 459598 2.34 470603 11 13724 459574 2.90 473298 12 11359 462899 2.40 474258 13 12690 472498 2.62 485188 14 14304 483047 2.88 497351 15 12129 493139 2.40 505268 16 11811 497423 2.32 509234 17 13958 501023 2.71 514981 18 11554 517048 2.19 528602 19 11593 525370 2.16 536963 20 13732 540256 2.48 553988 21 11633 539889 2.11 551522 22 12482 539394 2.26 551876 23 14100 539836 2.55 553936 24 11867 539926 2.15 551793 25 12715 540881 2.30 553596 26 14537 543815 2.60 558352 27 12053 545731 2.16 557784 28 12021 544393 2.16 556414 29 14328 541785 2.58 556113 30 11829 535946 2.16 547775 31 12353 527673 2.29 540026 32 13606 527645 2.51 541251 33 11905 525117 2.22 537022 34 13211 528740 2.44 541951 35 14047 519321 2.63 533368 36 11973 524842 2.23 536815 37 11514 517129 2.18 528643 38 13668 517096 2.58 530764 39 11292 510597 2.16 521889 40 11805 507959 2.27 519764 41 13517 507682 2.59 521199 42 12013 509371 2.30 521384 43 12373 502926 2.40 515299 44 13378 504012 2.59 517390 45 11700 497256 2.30 508956 46 11612 494986 2.29 506598 47 12881 489810 2.56 502691 48 11080 486275 2.23 497355 49 11171 479923 2.27 491094 50 12712 475065 2.61 487777 51 10706 468431 2.23 479137 52 11426 464872 2.40 476298 53 12787 459408 2.71 472195 54 11093 458291 2.36 469384 55 11190 454755 2.40 465945 56 12671 452471 2.72 465142 57 10392 455232 2.23 465624 58 11016 450187 2.39 461203 59 12793 450378 2.76 463171 60 10255 442168 2.27 452423 61 11173 438058 2.49 449231 62 12054 432782 2.71 444836 63 10321 428667 2.35 438988 64 11116 424450 2.55 435566 65 11775 420186 2.73 431961 66 9962 416425 2.34 426387 67 10081 413151 2.38 423232 68 11458 410693 2.71 422151 69 9658 407238 2.32 416896 70 9888 402508 2.40 412396 71 11203 400060 2.72 411263 72 9568 398051 2.35 407619 73 10641 390291 2.65 400932 74 11061 389710 2.76 400771 75 9308 386685 2.35 395993 76 9440 384343 2.40 393783 77 11195 381307 2.85 392502 78 8966 375759 2.33 384725 79 9120 374531 2.38 383651 80 10628 369902 2.79 380530 81 9098 365057 2.43 374155 82 9792 360039 2.65 369831 83 10749 360808 2.89 371557 84 9063 355872 2.48 364935 85 9023 349822 2.51 358845 86 10183 345788 2.86 355971 87 8727 344868 2.47 353595 88 8484 341390 2.42 349874 89 9900 338061 2.85 347961 90 8389 335692 2.44 344081 91 8661 331544 2.55 340205 92 9376 329073 2.77 338449 93 8181 326002 2.45 334183 94 8369 322071 2.53 330440 95 9578 317491 2.93 327069 96 7807 312583 2.44 320390 97 7485 303481 2.41 310966 98 8291 283070 2.85 291361 99 4803 194777 2.41 199580 100 5526 172552 3.10 178078 101 8388 287354 2.84 295742 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 59131 58988 50.06 118119 2 50108 48657 50.73 98765 3 53907 54682 49.64 108589 4 49308 60679 44.83 109987 5 21871 78097 21.88 99968 6 13333 42825 23.74 56158 7 11691 45114 20.58 56805 8 11855 41036 22.41 52891 9 10556 35601 22.87 46157 10 11628 39872 22.58 51500 11 12614 38482 24.69 51096 12 12077 37101 24.56 49178 13 12495 36091 25.72 48586 14 12952 36727 26.07 49679 15 12604 33918 27.09 46522 16 11961 32349 26.99 44310 17 13968 35725 28.11 49693 18 13845 34440 28.67 48285 19 13130 33461 28.18 46591 20 11981 32534 26.91 44515 21 12792 31174 29.10 43966 22 12946 32310 28.61 45256 23 12036 31172 27.86 43208 24 11211 29057 27.84 40268 25 12606 31310 28.70 43916 26 11480 28965 28.38 40445 27 12297 29873 29.16 42170 28 11299 28705 28.24 40004 29 11809 29722 28.43 41531 30 11397 27810 29.07 39207 31 11086 27860 28.47 38946 32 10635 26898 28.34 37533 33 12341 27173 31.23 39514 34 11413 28153 28.85 39566 35 13608 31079 30.45 44687 36 11507 27041 29.85 38548 37 11836 27798 29.86 39634 38 10294 26245 28.17 36539 39 10906 26561 29.11 37467 40 11888 26060 31.33 37948 41 10757 25981 29.28 36738 42 10650 26484 28.68 37134 43 10341 25590 28.78 35931 44 9857 25200 28.12 35057 45 12472 28292 30.60 40764 46 9701 23190 29.49 32891 47 9698 23593 29.13 33291 48 9877 23777 29.35 33654 49 9559 23881 28.59 33440 50 9144 22727 28.69 31871 51 8940 22209 28.70 31149 52 9040 22772 28.42 31812 53 9165 22050 29.36 31215 54 9321 22297 29.48 31618 55 9219 22244 29.30 31463 56 8571 21224 28.77 29795 57 8994 22096 28.93 31090 58 8692 21147 29.13 29839 59 8518 20331 29.53 28849 60 8460 21005 28.71 29465 61 7841 19760 28.41 27601 62 7888 19463 28.84 27351 63 8524 19748 30.15 28272 64 8019 19510 29.13 27529 65 7712 18457 29.47 26169 66 8181 18775 30.35 26956 67 7531 19564 27.79 27095 68 8517 20484 29.37 29001 69 7499 18126 29.26 25625 70 7174 17870 28.65 25044 71 7531 17432 30.17 24963 72 7296 17313 29.65 24609 73 7228 17650 29.05 24878 74 6557 16909 27.94 23466 75 6615 16607 28.49 23222 76 6701 16122 29.36 22823 77 6717 16248 29.25 22965 78 6699 16297 29.13 22996 79 6374 16153 28.29 22527 80 6237 15866 28.22 22103 81 6269 15514 28.78 21783 82 6114 15667 28.07 21781 83 6296 15172 29.33 21468 84 6976 16367 29.88 23343 85 6011 15118 28.45 21129 86 5904 14860 28.43 20764 87 5992 14453 29.31 20445 88 5977 14458 29.25 20435 89 6162 14971 29.16 21133 90 6128 14661 29.48 20789 91 5730 14274 28.64 20004 92 5593 13684 29.01 19277 93 5688 13645 29.42 19333 94 5716 13581 29.62 19297 95 5703 13562 29.60 19265 96 5608 13609 29.18 19217 97 6047 14716 29.12 20763 98 5492 12924 29.82 18416 99 4883 0 100.00 4883 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 15248 75283 16.84 90531 2 15317 75273 16.91 90590 3 14074 75837 15.65 89911 4 15408 82064 15.81 97472 5 1587 149646 1.05 151233 6 1425 185180 0.76 186605 7 857 101120 0.84 101977 8 804 108145 0.74 108949 9 713 89578 0.79 90291 10 744 85438 0.86 86182 11 1030 116158 0.88 117188 12 808 92771 0.86 93579 13 749 91203 0.81 91952 14 747 86508 0.86 87255 15 748 82553 0.90 83301 16 704 77684 0.90 78388 17 794 83594 0.94 84388 18 941 73987 1.26 74928 19 709 72086 0.97 72795 20 679 71692 0.94 72371 21 923 68248 1.33 69171 22 812 74644 1.08 75456 23 688 74326 0.92 75014 24 602 66841 0.89 67443 25 655 67567 0.96 68222 26 726 70862 1.01 71588 27 629 66168 0.94 66797 28 583 64144 0.90 64727 29 651 67882 0.95 68533 30 626 66486 0.93 67112 31 518 62803 0.82 63321 32 576 64120 0.89 64696 33 641 77223 0.82 77864 34 513 62754 0.81 63267 35 564 64787 0.86 65351 36 531 66537 0.79 67068 37 494 59772 0.82 60266 38 622 63551 0.97 64173 39 577 58165 0.98 58742 40 514 58584 0.87 59098 41 498 56547 0.87 57045 42 498 54205 0.91 54703 43 567 55587 1.01 56154 44 519 55276 0.93 55795 45 524 52265 0.99 52789 46 485 52128 0.92 52613 47 524 53959 0.96 54483 48 502 51600 0.96 52102 49 525 53730 0.97 54255 50 555 51347 1.07 51902 51 467 48923 0.95 49390 52 482 48035 0.99 48517 53 581 53513 1.07 54094 54 502 49256 1.01 49758 55 458 48060 0.94 48518 56 467 48752 0.95 49219 57 573 46775 1.21 47348 58 448 45693 0.97 46141 59 440 46935 0.93 47375 60 515 46165 1.10 46680 61 448 45842 0.97 46290 62 485 47064 1.02 47549 63 485 45985 1.04 46470 64 390 43290 0.89 43680 65 447 44793 0.99 45240 66 401 41579 0.96 41980 67 433 45067 0.95 45500 68 389 43165 0.89 43554 69 403 42701 0.93 43104 70 401 42417 0.94 42818 71 427 43331 0.98 43758 72 349 41083 0.84 41432 73 378 39789 0.94 40167 74 356 41038 0.86 41394 75 367 39509 0.92 39876 76 339 38075 0.88 38414 77 359 40364 0.88 40723 78 337 37526 0.89 37863 79 322 37895 0.84 38217 80 350 36793 0.94 37143 81 346 35852 0.96 36198 82 331 35050 0.94 35381 83 348 35364 0.97 35712 84 330 34938 0.94 35268 85 317 38342 0.82 38659 86 313 34285 0.90 34598 87 334 34400 0.96 34734 88 283 32995 0.85 33278 89 313 34381 0.90 34694 90 365 34188 1.06 34553 91 349 35623 0.97 35972 92 289 33351 0.86 33640 93 296 32151 0.91 32447 94 318 31766 0.99 32084 95 371 32281 1.14 32652 96 350 31069 1.11 31419 97 317 30724 1.02 31041 98 272 30802 0.88 31074 99 271 0 100.00 271 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22960 97673 19.03 120633 2 19428 79470 19.64 98898 3 20079 81721 19.72 101800 4 19522 79409 19.73 98931 5 4814 164491 2.84 169305 6 5064 223634 2.21 228698 7 5214 306896 1.67 312110 8 5481 300413 1.79 305894 9 6066 281839 2.11 287905 10 5529 290624 1.87 296153 11 5647 284980 1.94 290627 12 5655 267431 2.07 273086 13 5528 276123 1.96 281651 14 5238 275331 1.87 280569 15 5353 282858 1.86 288211 16 4920 271904 1.78 276824 17 5064 269468 1.84 274532 18 4998 269480 1.82 274478 19 4638 250263 1.82 254901 20 4846 265398 1.79 270244 21 4971 251192 1.94 256163 22 4979 241788 2.02 246767 23 4655 238257 1.92 242912 24 4500 229039 1.93 233539 25 4733 228353 2.03 233086 26 4605 227303 1.99 231908 27 4904 245797 1.96 250701 28 4283 231625 1.82 235908 29 4467 225020 1.95 229487 30 4777 219456 2.13 224233 31 4254 215785 1.93 220039 32 4188 209837 1.96 214025 33 4397 208392 2.07 212789 34 4438 207185 2.10 211623 35 4524 214618 2.06 219142 36 4114 210135 1.92 214249 37 3957 208813 1.86 212770 38 4365 221251 1.93 225616 39 4312 201166 2.10 205478 40 3940 212217 1.82 216157 41 4059 198589 2.00 202648 42 4083 204190 1.96 208273 43 4161 192972 2.11 197133 44 3845 191355 1.97 195200 45 4000 192018 2.04 196018 46 3734 193937 1.89 197671 47 3749 189205 1.94 192954 48 3921 185844 2.07 189765 49 3482 190810 1.79 194292 50 3615 186155 1.90 189770 51 3758 181685 2.03 185443 52 3419 172916 1.94 176335 53 3284 172382 1.87 175666 54 3216 169294 1.86 172510 55 3228 176907 1.79 180135 56 3196 169179 1.85 172375 57 3321 175328 1.86 178649 58 3019 168810 1.76 171829 59 3154 161487 1.92 164641 60 3239 167213 1.90 170452 61 3313 159376 2.04 162689 62 2938 158568 1.82 161506 63 3062 158755 1.89 161817 64 2975 153536 1.90 156511 65 2888 157535 1.80 160423 66 2904 150927 1.89 153831 67 2735 150993 1.78 153728 68 2878 156739 1.80 159617 69 2998 151928 1.94 154926 70 2618 145648 1.77 148266 71 2663 144369 1.81 147032 72 2684 144188 1.83 146872 73 2647 142158 1.83 144805 74 2597 142756 1.79 145353 75 2581 141918 1.79 144499 76 2491 136164 1.80 138655 77 2663 135444 1.93 138107 78 2636 136536 1.89 139172 79 2442 138726 1.73 141168 80 2503 133735 1.84 136238 81 2701 134135 1.97 136836 82 2409 132275 1.79 134684 83 2462 130591 1.85 133053 84 2529 129407 1.92 131936 85 2335 128727 1.78 131062 86 2321 127173 1.79 129494 87 2461 125644 1.92 128105 88 2180 122083 1.75 124263 89 2167 121671 1.75 123838 90 2325 120875 1.89 123200 91 2320 119970 1.90 122290 92 2132 119085 1.76 121217 93 2103 118256 1.75 120359 94 2026 117327 1.70 119353 95 2034 114615 1.74 116649 96 2017 111862 1.77 113879 97 1939 112232 1.70 114171 98 1617 108787 1.46 110404 99 1234 0 100.00 1234