EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6392902 lines in total Total number of methylation call strings processed: 12785804 Final Cytosine Methylation Report ================================= Total number of C's analysed: 126318223 Total methylated C's in CpG context: 5908942 Total methylated C's in CHG context: 702435 Total methylated C's in CHH context: 1841804 Total C to T conversions in CpG context: 11618123 Total C to T conversions in CHG context: 25937403 Total C to T conversions in CHH context: 80309516 C methylated in CpG context: 33.7% C methylated in CHG context: 2.6% C methylated in CHH context: 2.2%