CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 116592 156776 42.65 273368 2 113233 176616 39.07 289849 3 109821 162034 40.40 271855 4 115609 135528 46.03 251137 5 111088 117408 48.62 228496 6 117015 96717 54.75 213732 7 128934 93725 57.91 222659 8 59969 109161 35.46 169130 9 52828 101072 34.33 153900 10 52495 98069 34.87 150564 11 54535 100460 35.19 154995 12 53434 102464 34.27 155898 13 53276 105030 33.65 158306 14 51110 106656 32.40 157766 15 50860 107588 32.10 158448 16 47700 107337 30.77 155037 17 44753 105398 29.81 150151 18 45691 106885 29.95 152576 19 44983 107387 29.52 152370 20 45954 109264 29.61 155218 21 45350 109738 29.24 155088 22 45080 108279 29.40 153359 23 44821 106973 29.53 151794 24 44216 107698 29.11 151914 25 43931 106813 29.14 150744 26 44677 105647 29.72 150324 27 44215 108667 28.92 152882 28 45490 107346 29.76 152836 29 44058 107109 29.15 151167 30 43577 107128 28.92 150705 31 44461 104505 29.85 148966 32 43312 102282 29.75 145594 33 43809 103817 29.68 147626 34 44383 103007 30.11 147390 35 43489 102247 29.84 145736 36 42922 103582 29.30 146504 37 42034 100746 29.44 142780 38 41085 99844 29.15 140929 39 42440 101969 29.39 144409 40 41856 99998 29.51 141854 41 41438 98587 29.59 140025 42 42334 100977 29.54 143311 43 41097 98355 29.47 139452 44 40731 97504 29.47 138235 45 40835 96899 29.65 137734 46 41401 97594 29.79 138995 47 40090 95892 29.48 135982 48 39540 95172 29.35 134712 49 41168 95047 30.22 136215 50 39533 95803 29.21 135336 51 39226 94439 29.35 133665 52 39718 96592 29.14 136310 53 37889 92148 29.14 130037 54 37534 90892 29.23 128426 55 37545 88630 29.76 126175 56 36989 87661 29.67 124650 57 36859 89583 29.15 126442 58 36761 88301 29.39 125062 59 36597 86739 29.67 123336 60 35964 86697 29.32 122661 61 35914 85214 29.65 121128 62 35304 84886 29.37 120190 63 34356 84482 28.91 118838 64 34132 83490 29.02 117622 65 33917 83243 28.95 117160 66 34329 82848 29.30 117177 67 33803 80647 29.54 114450 68 33040 80378 29.13 113418 69 32873 79720 29.20 112593 70 32173 78985 28.94 111158 71 31812 77262 29.17 109074 72 31230 77075 28.84 108305 73 30988 75479 29.11 106467 74 30590 74891 29.00 105481 75 29579 74058 28.54 103637 76 29465 73785 28.54 103250 77 30027 72314 29.34 102341 78 29674 73871 28.66 103545 79 29022 72125 28.69 101147 80 28802 71609 28.68 100411 81 28120 71291 28.29 99411 82 27544 69320 28.44 96864 83 28106 70046 28.64 98152 84 27870 69286 28.69 97156 85 27410 67881 28.76 95291 86 26430 66532 28.43 92962 87 25712 66473 27.89 92185 88 26076 66656 28.12 92732 89 25537 64822 28.26 90359 90 25236 65248 27.89 90484 91 24893 63215 28.25 88108 92 24616 63222 28.02 87838 93 24317 62878 27.89 87195 94 24387 61698 28.33 86085 95 23905 61086 28.13 84991 96 23878 61775 27.88 85653 97 23117 59575 27.96 82692 98 21700 55133 28.24 76833 99 17030 43572 28.10 60602 100 22555 55082 29.05 77637 101 21785 55669 28.13 77454 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 145439 217550 40.07 362989 2 82849 216009 27.72 298858 3 33136 211629 13.54 244765 4 18285 204518 8.21 222803 5 12643 184202 6.42 196845 6 10702 171792 5.86 182494 7 8304 221485 3.61 229789 8 3610 242136 1.47 245746 9 3160 231289 1.35 234449 10 3096 225075 1.36 228171 11 3082 227328 1.34 230410 12 2962 224238 1.30 227200 13 2866 217843 1.30 220709 14 2591 217769 1.18 220360 15 2588 224474 1.14 227062 16 2185 224032 0.97 226217 17 2225 223290 0.99 225515 18 2161 221081 0.97 223242 19 2149 221761 0.96 223910 20 2336 232632 0.99 234968 21 2371 234479 1.00 236850 22 2393 231201 1.02 233594 23 2482 235404 1.04 237886 24 2477 235382 1.04 237859 25 2408 228742 1.04 231150 26 2732 230485 1.17 233217 27 2556 231873 1.09 234429 28 2535 230155 1.09 232690 29 2772 233536 1.17 236308 30 2574 234483 1.09 237057 31 2517 226600 1.10 229117 32 2651 230722 1.14 233373 33 2736 230633 1.17 233369 34 2630 225798 1.15 228428 35 2973 225833 1.30 228806 36 2658 225604 1.16 228262 37 2702 220311 1.21 223013 38 2885 223160 1.28 226045 39 2668 220886 1.19 223554 40 2719 219428 1.22 222147 41 2648 219565 1.19 222213 42 2719 217377 1.24 220096 43 2622 214143 1.21 216765 44 2600 215268 1.19 217868 45 2599 213593 1.20 216192 46 2630 211487 1.23 214117 47 2774 211020 1.30 213794 48 2715 213591 1.26 216306 49 2680 208356 1.27 211036 50 2741 206850 1.31 209591 51 2786 208655 1.32 211441 52 2621 205785 1.26 208406 53 2727 202448 1.33 205175 54 2740 202857 1.33 205597 55 2631 199303 1.30 201934 56 2736 201099 1.34 203835 57 2576 198713 1.28 201289 58 2526 196418 1.27 198944 59 2726 196750 1.37 199476 60 2638 195209 1.33 197847 61 2710 191634 1.39 194344 62 2751 191804 1.41 194555 63 2540 188690 1.33 191230 64 2473 187315 1.30 189788 65 2794 187292 1.47 190086 66 2594 182278 1.40 184872 67 2516 177846 1.39 180362 68 2685 179419 1.47 182104 69 2488 177439 1.38 179927 70 2437 174086 1.38 176523 71 2447 173546 1.39 175993 72 2360 172256 1.35 174616 73 2382 169452 1.39 171834 74 2540 168095 1.49 170635 75 2303 168050 1.35 170353 76 2259 161637 1.38 163896 77 2362 163497 1.42 165859 78 2286 160453 1.40 162739 79 2236 156521 1.41 158757 80 2276 157290 1.43 159566 81 2187 153861 1.40 156048 82 2104 151139 1.37 153243 83 2206 154074 1.41 156280 84 2253 153292 1.45 155545 85 2273 150029 1.49 152302 86 2172 149794 1.43 151966 87 2189 150743 1.43 152932 88 2104 146397 1.42 148501 89 2296 145040 1.56 147336 90 2070 144812 1.41 146882 91 2080 141952 1.44 144032 92 2224 142996 1.53 145220 93 2290 141004 1.60 143294 94 2104 137448 1.51 139552 95 2159 135849 1.56 138008 96 2097 135188 1.53 137285 97 2084 122382 1.67 124466 98 1812 113387 1.57 115199 99 1214 73054 1.63 74268 100 1351 73390 1.81 74741 101 3002 123742 2.37 126744 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 166904 272466 37.99 439370 2 81961 301092 21.40 383053 3 43200 356615 10.80 399815 4 38767 376954 9.33 415721 5 37020 456131 7.51 493151 6 30162 503872 5.65 534034 7 26064 651439 3.85 677503 8 15849 715180 2.17 731029 9 11899 652828 1.79 664727 10 11400 631237 1.77 642637 11 13618 631818 2.11 645436 12 11509 633228 1.79 644737 13 12455 644750 1.90 657205 14 13542 659340 2.01 672882 15 11688 672747 1.71 684435 16 11580 678479 1.68 690059 17 13069 684704 1.87 697773 18 11199 706899 1.56 718098 19 11214 719752 1.53 730966 20 12939 740385 1.72 753324 21 11452 740102 1.52 751554 22 12155 739595 1.62 751750 23 13446 737070 1.79 750516 24 11507 734350 1.54 745857 25 12150 734444 1.63 746594 26 13432 735662 1.79 749094 27 11645 740990 1.55 752635 28 11497 740272 1.53 751769 29 13677 735876 1.82 749553 30 11597 725992 1.57 737589 31 11924 716079 1.64 728003 32 12964 712949 1.79 725913 33 11323 712434 1.56 723757 34 12399 713671 1.71 726070 35 13338 704635 1.86 717973 36 11521 707631 1.60 719152 37 11206 699432 1.58 710638 38 13098 698346 1.84 711444 39 10959 690358 1.56 701317 40 11300 685278 1.62 696578 41 12924 685927 1.85 698851 42 11344 686031 1.63 697375 43 11685 675859 1.70 687544 44 12742 678792 1.84 691534 45 11456 665618 1.69 677074 46 11253 667380 1.66 678633 47 12539 660752 1.86 673291 48 10765 656825 1.61 667590 49 11137 647075 1.69 658212 50 12008 643413 1.83 655421 51 10598 633402 1.65 644000 52 11065 626440 1.74 637505 53 11912 617149 1.89 629061 54 10722 616518 1.71 627240 55 11127 611522 1.79 622649 56 11937 607635 1.93 619572 57 10526 612777 1.69 623303 58 10684 606667 1.73 617351 59 11979 604829 1.94 616808 60 10054 595373 1.66 605427 61 10570 590179 1.76 600749 62 11410 582115 1.92 593525 63 10006 576395 1.71 586401 64 10504 570943 1.81 581447 65 11367 565724 1.97 577091 66 9625 561410 1.69 571035 67 9952 558034 1.75 567986 68 10914 552202 1.94 563116 69 9393 547891 1.69 557284 70 9492 542032 1.72 551524 71 10567 538503 1.92 549070 72 9204 534491 1.69 543695 73 10209 524637 1.91 534846 74 10138 522601 1.90 532739 75 9017 519698 1.71 528715 76 9051 515219 1.73 524270 77 10448 509552 2.01 520000 78 8716 503645 1.70 512361 79 8770 501322 1.72 510092 80 9894 496077 1.96 505971 81 8798 487327 1.77 496125 82 9167 482039 1.87 491206 83 9929 481634 2.02 491563 84 8708 474305 1.80 483013 85 8478 467455 1.78 475933 86 9442 460910 2.01 470352 87 8515 457078 1.83 465593 88 8151 453534 1.77 461685 89 9368 448295 2.05 457663 90 7978 445526 1.76 453504 91 8215 440696 1.83 448911 92 8911 436771 2.00 445682 93 7808 431830 1.78 439638 94 7895 425591 1.82 433486 95 8820 419322 2.06 428142 96 7454 410367 1.78 417821 97 7496 400556 1.84 408052 98 7765 371988 2.04 379753 99 4614 255447 1.77 260061 100 5318 226700 2.29 232018 101 8274 378266 2.14 386540 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 76629 78452 49.41 155081 2 65285 64866 50.16 130151 3 70661 74366 48.72 145027 4 64433 82627 43.81 147060 5 28681 107726 21.03 136407 6 17501 58297 23.09 75798 7 15328 60638 20.18 75966 8 15597 55963 21.80 71560 9 14190 49111 22.42 63301 10 15072 53845 21.87 68917 11 16070 52296 23.51 68366 12 15946 49893 24.22 65839 13 16203 49399 24.70 65602 14 16910 50163 25.21 67073 15 16474 46316 26.24 62790 16 15358 43912 25.91 59270 17 18287 47522 27.79 65809 18 17732 46805 27.48 64537 19 17035 45988 27.03 63023 20 15669 43657 26.41 59326 21 16465 42534 27.91 58999 22 16340 43172 27.46 59512 23 15708 41387 27.51 57095 24 14632 39622 26.97 54254 25 15924 41668 27.65 57592 26 14737 38953 27.45 53690 27 15848 39937 28.41 55785 28 14672 37851 27.93 52523 29 15101 39244 27.79 54345 30 14644 37097 28.30 51741 31 13965 37532 27.12 51497 32 13414 35507 27.42 48921 33 15384 36429 29.69 51813 34 14670 38230 27.73 52900 35 17256 40686 29.78 57942 36 14469 35970 28.69 50439 37 14903 36993 28.72 51896 38 13247 34898 27.51 48145 39 13905 35023 28.42 48928 40 15018 34726 30.19 49744 41 13046 34351 27.52 47397 42 13316 34842 27.65 48158 43 13149 33711 28.06 46860 44 12611 33200 27.53 45811 45 15526 36575 29.80 52101 46 12025 30730 28.13 42755 47 12250 31218 28.18 43468 48 12492 31334 28.50 43826 49 11869 31895 27.12 43764 50 11361 29803 27.60 41164 51 11627 29220 28.46 40847 52 11225 30061 27.19 41286 53 11621 28782 28.76 40403 54 11416 29121 28.16 40537 55 11483 28910 28.43 40393 56 10694 27766 27.81 38460 57 11061 28748 27.79 39809 58 10970 27544 28.48 38514 59 10526 26343 28.55 36869 60 10642 26859 28.38 37501 61 9335 25647 26.69 34982 62 9698 25309 27.70 35007 63 10420 25262 29.20 35682 64 9898 25040 28.33 34938 65 9565 23823 28.65 33388 66 9912 24589 28.73 34501 67 9355 25325 26.98 34680 68 10228 26195 28.08 36423 69 9227 22912 28.71 32139 70 8933 22952 28.02 31885 71 9210 22420 29.12 31630 72 8560 22035 27.98 30595 73 8646 22210 28.02 30856 74 8040 21386 27.32 29426 75 7884 21287 27.03 29171 76 8148 20657 28.29 28805 77 8054 20645 28.06 28699 78 8001 20722 27.86 28723 79 7694 20471 27.32 28165 80 7476 19955 27.25 27431 81 7448 19723 27.41 27171 82 7595 19817 27.71 27412 83 7505 19183 28.12 26688 84 8276 20970 28.30 29246 85 7139 19199 27.11 26338 86 7133 18938 27.36 26071 87 7117 18213 28.10 25330 88 7082 18093 28.13 25175 89 7439 18701 28.46 26140 90 7315 18546 28.29 25861 91 6790 18215 27.15 25005 92 6763 17136 28.30 23899 93 6770 17168 28.28 23938 94 6991 17402 28.66 24393 95 6761 17330 28.06 24091 96 6575 17106 27.76 23681 97 7196 18081 28.47 25277 98 6339 15632 28.85 21971 99 5731 0 100.00 5731 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20163 99198 16.89 119361 2 20352 100654 16.82 121006 3 18444 101647 15.36 120091 4 20127 109307 15.55 129434 5 2141 200257 1.06 202398 6 1603 247125 0.64 248728 7 953 135714 0.70 136667 8 1072 143639 0.74 144711 9 891 119590 0.74 120481 10 945 113571 0.83 114516 11 1280 153199 0.83 154479 12 1051 122637 0.85 123688 13 964 120880 0.79 121844 14 941 114244 0.82 115185 15 916 110370 0.82 111286 16 872 103617 0.83 104489 17 968 110032 0.87 111000 18 1026 97646 1.04 98672 19 885 95353 0.92 96238 20 817 95122 0.85 95939 21 1016 90803 1.11 91819 22 892 97241 0.91 98133 23 900 97466 0.91 98366 24 755 87863 0.85 88618 25 822 88742 0.92 89564 26 891 92271 0.96 93162 27 789 86741 0.90 87530 28 754 84075 0.89 84829 29 838 88952 0.93 89790 30 709 86175 0.82 86884 31 758 82101 0.91 82859 32 738 83454 0.88 84192 33 843 98651 0.85 99494 34 680 81568 0.83 82248 35 738 84295 0.87 85033 36 694 85290 0.81 85984 37 633 77793 0.81 78426 38 667 82111 0.81 82778 39 702 75614 0.92 76316 40 677 75792 0.89 76469 41 656 73166 0.89 73822 42 673 69042 0.97 69715 43 636 72297 0.87 72933 44 619 70493 0.87 71112 45 626 67158 0.92 67784 46 609 67593 0.89 68202 47 658 68618 0.95 69276 48 669 66122 1.00 66791 49 617 68985 0.89 69602 50 607 66263 0.91 66870 51 560 62556 0.89 63116 52 570 61192 0.92 61762 53 607 67998 0.88 68605 54 527 62649 0.83 63176 55 576 60961 0.94 61537 56 521 61980 0.83 62501 57 607 58829 1.02 59436 58 524 57871 0.90 58395 59 536 59495 0.89 60031 60 640 57998 1.09 58638 61 553 57563 0.95 58116 62 580 58987 0.97 59567 63 518 57757 0.89 58275 64 454 54005 0.83 54459 65 539 55829 0.96 56368 66 490 52207 0.93 52697 67 505 56558 0.88 57063 68 490 53871 0.90 54361 69 467 53905 0.86 54372 70 474 52985 0.89 53459 71 449 54766 0.81 55215 72 450 50494 0.88 50944 73 423 49499 0.85 49922 74 413 51246 0.80 51659 75 407 48835 0.83 49242 76 408 47452 0.85 47860 77 471 50086 0.93 50557 78 384 46706 0.82 47090 79 385 46577 0.82 46962 80 394 45837 0.85 46231 81 371 44273 0.83 44644 82 410 43622 0.93 44032 83 394 44268 0.88 44662 84 386 42855 0.89 43241 85 391 47467 0.82 47858 86 374 42775 0.87 43149 87 366 42775 0.85 43141 88 331 40277 0.82 40608 89 366 42071 0.86 42437 90 411 41994 0.97 42405 91 383 43538 0.87 43921 92 348 41295 0.84 41643 93 345 39188 0.87 39533 94 367 38016 0.96 38383 95 354 39802 0.88 40156 96 383 37451 1.01 37834 97 365 37239 0.97 37604 98 295 37257 0.79 37552 99 268 0 100.00 268 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 27356 129987 17.39 157343 2 22665 105686 17.66 128351 3 22596 108283 17.26 130879 4 21810 105374 17.15 127184 5 4786 214494 2.18 219280 6 4601 292334 1.55 296935 7 5028 400685 1.24 405713 8 5183 393027 1.30 398210 9 5717 368672 1.53 374389 10 5085 379072 1.32 384157 11 5230 372771 1.38 378001 12 5216 346282 1.48 351498 13 4958 358750 1.36 363708 14 4976 358735 1.37 363711 15 5120 367737 1.37 372857 16 4562 353593 1.27 358155 17 4912 350720 1.38 355632 18 4903 348825 1.39 353728 19 4444 324558 1.35 329002 20 4687 341872 1.35 346559 21 4599 323245 1.40 327844 22 4524 311141 1.43 315665 23 4309 306666 1.39 310975 24 4159 293700 1.40 297859 25 4323 292911 1.45 297234 26 4351 292262 1.47 296613 27 4596 312751 1.45 317347 28 4168 295871 1.39 300039 29 4069 288199 1.39 292268 30 4159 281098 1.46 285257 31 3796 275619 1.36 279415 32 3885 267446 1.43 271331 33 3939 265364 1.46 269303 34 4017 263335 1.50 267352 35 4355 271344 1.58 275699 36 3860 266885 1.43 270745 37 3655 265556 1.36 269211 38 3999 279295 1.41 283294 39 3901 254097 1.51 257998 40 3816 268326 1.40 272142 41 3721 250299 1.46 254020 42 3749 257384 1.44 261133 43 3813 244223 1.54 248036 44 3518 240924 1.44 244442 45 3732 242454 1.52 246186 46 3388 244175 1.37 247563 47 3489 237038 1.45 240527 48 3557 231670 1.51 235227 49 3351 237401 1.39 240752 50 3347 232649 1.42 235996 51 3371 226635 1.47 230006 52 3208 216870 1.46 220078 53 3127 215428 1.43 218555 54 2954 210639 1.38 213593 55 3058 219014 1.38 222072 56 2984 210691 1.40 213675 57 2985 217087 1.36 220072 58 2922 209155 1.38 212077 59 2947 200084 1.45 203031 60 2812 207229 1.34 210041 61 2942 197225 1.47 200167 62 2753 196078 1.38 198831 63 2756 196252 1.38 199008 64 2701 189810 1.40 192511 65 2684 193122 1.37 195806 66 2746 185001 1.46 187747 67 2524 186218 1.34 188742 68 2599 192984 1.33 195583 69 2631 186394 1.39 189025 70 2331 179198 1.28 181529 71 2429 177022 1.35 179451 72 2407 176069 1.35 178476 73 2389 173630 1.36 176019 74 2303 174369 1.30 176672 75 2349 172826 1.34 175175 76 2223 166112 1.32 168335 77 2309 165107 1.38 167416 78 2339 165429 1.39 167768 79 2213 168349 1.30 170562 80 2225 163016 1.35 165241 81 2290 162835 1.39 165125 82 2220 160208 1.37 162428 83 2280 158757 1.42 161037 84 2250 156889 1.41 159139 85 2127 155633 1.35 157760 86 2120 153519 1.36 155639 87 2194 152133 1.42 154327 88 1978 146515 1.33 148493 89 1974 146387 1.33 148361 90 2147 145276 1.46 147423 91 2024 143815 1.39 145839 92 1982 142502 1.37 144484 93 1915 140922 1.34 142837 94 1802 140023 1.27 141825 95 1892 137068 1.36 138960 96 1801 134599 1.32 136400 97 1738 134348 1.28 136086 98 1538 129092 1.18 130630 99 1071 0 100.00 1071