CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 170911 200777 45.98 371688 2 165498 219899 42.94 385397 3 158639 199134 44.34 357773 4 168758 171334 49.62 340092 5 161518 151738 51.56 313256 6 163942 123997 56.94 287939 7 180838 121580 59.80 302418 8 85686 143035 37.46 228721 9 76323 133819 36.32 210142 10 75522 129341 36.86 204863 11 78140 133575 36.91 211715 12 76134 135552 35.97 211686 13 74290 136984 35.16 211274 14 70738 138423 33.82 209161 15 70037 140855 33.21 210892 16 64722 139173 31.74 203895 17 60944 136431 30.88 197375 18 62424 137973 31.15 200397 19 61497 138902 30.69 200399 20 63139 141104 30.91 204243 21 62273 141585 30.55 203858 22 61586 139608 30.61 201194 23 61048 139559 30.43 200607 24 60915 139755 30.36 200670 25 58776 136595 30.08 195371 26 60008 137093 30.45 197101 27 59181 140836 29.59 200017 28 61668 140967 30.43 202635 29 59468 139710 29.86 199178 30 58821 139922 29.60 198743 31 59892 137168 30.39 197060 32 58310 135327 30.11 193637 33 59189 136818 30.20 196007 34 60867 136838 30.79 197705 35 59011 136809 30.14 195820 36 58389 137713 29.77 196102 37 56829 134216 29.75 191045 38 55818 134090 29.39 189908 39 57832 135907 29.85 193739 40 57296 133936 29.96 191232 41 56832 134325 29.73 191157 42 58599 137447 29.89 196046 43 56888 134383 29.74 191271 44 56895 133879 29.82 190774 45 57639 133308 30.19 190947 46 58078 134296 30.19 192374 47 57089 132267 30.15 189356 48 56990 131613 30.22 188603 49 58421 132803 30.55 191224 50 56387 133132 29.75 189519 51 56488 132848 29.83 189336 52 57126 135614 29.64 192740 53 55970 130566 30.00 186536 54 54669 129178 29.74 183847 55 54409 127447 29.92 181856 56 54486 126162 30.16 180648 57 54800 128902 29.83 183702 58 55156 127992 30.12 183148 59 55426 126799 30.42 182225 60 53066 127490 29.39 180556 61 53984 125353 30.10 179337 62 53198 125536 29.76 178734 63 52556 124457 29.69 177013 64 51949 123525 29.60 175474 65 52153 123218 29.74 175371 66 53553 124217 30.12 177770 67 52168 122037 29.95 174205 68 51464 121322 29.78 172786 69 50930 121159 29.60 172089 70 50875 120109 29.75 170984 71 49660 118012 29.62 167672 72 49211 118190 29.40 167401 73 48811 117002 29.44 165813 74 48585 116090 29.50 164675 75 47405 116305 28.96 163710 76 47399 114634 29.25 162033 77 48529 113991 29.86 162520 78 48353 114821 29.63 163174 79 47194 112739 29.51 159933 80 46246 113038 29.03 159284 81 46390 112075 29.27 158465 82 44875 110009 28.97 154884 83 45913 111237 29.22 157150 84 45535 110413 29.20 155948 85 44670 109370 29.00 154040 86 44008 107156 29.11 151164 87 42406 105986 28.58 148392 88 42987 104998 29.05 147985 89 42189 104542 28.75 146731 90 42445 105300 28.73 147745 91 41646 103776 28.64 145422 92 41083 103466 28.42 144549 93 41128 102650 28.61 143778 94 41205 102122 28.75 143327 95 40123 100860 28.46 140983 96 40378 100887 28.58 141265 97 39441 97387 28.83 136828 98 36647 92129 28.46 128776 99 29262 72041 28.89 101303 100 38024 91785 29.29 129809 101 34846 91940 27.48 126786 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 200821 288774 41.02 489595 2 113714 271465 29.52 385179 3 47610 270765 14.95 318375 4 26309 273420 8.78 299729 5 17394 247803 6.56 265197 6 13899 229910 5.70 243809 7 11659 294140 3.81 305799 8 5373 320871 1.65 326244 9 4384 303795 1.42 308179 10 4382 293301 1.47 297683 11 4497 298340 1.48 302837 12 4509 294835 1.51 299344 13 3913 286666 1.35 290579 14 3549 288389 1.22 291938 15 3511 295469 1.17 298980 16 3140 295278 1.05 298418 17 3093 293759 1.04 296852 18 3042 291442 1.03 294484 19 2983 292671 1.01 295654 20 2984 306076 0.97 309060 21 2984 309859 0.95 312843 22 3099 306165 1.00 309264 23 3176 312221 1.01 315397 24 3064 312406 0.97 315470 25 3395 303793 1.11 307188 26 3432 306634 1.11 310066 27 3076 309786 0.98 312862 28 2992 309552 0.96 312544 29 3119 312746 0.99 315865 30 3022 314298 0.95 317320 31 2989 306209 0.97 309198 32 3367 308485 1.08 311852 33 3073 312253 0.97 315326 34 2995 307448 0.96 310443 35 3462 307632 1.11 311094 36 3152 308004 1.01 311156 37 2930 300911 0.96 303841 38 3407 306185 1.10 309592 39 3067 303421 1.00 306488 40 2969 301709 0.97 304678 41 3098 303602 1.01 306700 42 3025 301816 0.99 304841 43 3140 298757 1.04 301897 44 3170 302286 1.04 305456 45 3139 302948 1.03 306087 46 3241 298798 1.07 302039 47 3324 299492 1.10 302816 48 3307 305196 1.07 308503 49 3098 297694 1.03 300792 50 3365 296703 1.12 300068 51 3139 299257 1.04 302396 52 3381 300156 1.11 303537 53 3380 294039 1.14 297419 54 3340 297297 1.11 300637 55 3303 292968 1.11 296271 56 3350 295664 1.12 299014 57 3333 293917 1.12 297250 58 3166 291725 1.07 294891 59 3529 293152 1.19 296681 60 3429 291974 1.16 295403 61 3377 288866 1.16 292243 62 3531 289325 1.21 292856 63 3345 285854 1.16 289199 64 3438 285006 1.19 288444 65 3972 286891 1.37 290863 66 3523 280838 1.24 284361 67 3393 275116 1.22 278509 68 3630 277456 1.29 281086 69 3388 276423 1.21 279811 70 3216 269795 1.18 273011 71 3298 270274 1.21 273572 72 3341 269090 1.23 272431 73 3325 267296 1.23 270621 74 3452 266767 1.28 270219 75 3309 265508 1.23 268817 76 3541 257232 1.36 260773 77 3549 260610 1.34 264159 78 3228 257955 1.24 261183 79 3453 250964 1.36 254417 80 3052 252539 1.19 255591 81 3145 249307 1.25 252452 82 3166 245521 1.27 248687 83 3229 250125 1.27 253354 84 3450 249303 1.36 252753 85 3161 245541 1.27 248702 86 3194 244445 1.29 247639 87 3688 244772 1.48 248460 88 4269 236024 1.78 240293 89 3207 239311 1.32 242518 90 3130 238658 1.29 241788 91 3219 236688 1.34 239907 92 3316 238781 1.37 242097 93 3311 234954 1.39 238265 94 3297 230774 1.41 234071 95 3246 228943 1.40 232189 96 3377 227051 1.47 230428 97 3095 208084 1.47 211179 98 2961 191784 1.52 194745 99 1900 125505 1.49 127405 100 1976 126246 1.54 128222 101 4223 207153 2.00 211376 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 236810 385900 38.03 622710 2 121027 421576 22.30 542603 3 63316 490715 11.43 554031 4 54172 515529 9.51 569701 5 50156 602615 7.68 652771 6 40564 651568 5.86 692132 7 35988 834395 4.13 870383 8 22142 901997 2.40 924139 9 16661 832656 1.96 849317 10 16183 811062 1.96 827245 11 18763 817149 2.24 835912 12 15748 830442 1.86 846190 13 17482 846522 2.02 864004 14 18856 869652 2.12 888508 15 16283 891939 1.79 908222 16 15842 904296 1.72 920138 17 18345 912887 1.97 931232 18 15630 946632 1.62 962262 19 15643 962137 1.60 977780 20 17960 993753 1.78 1011713 21 15286 996537 1.51 1011823 22 16672 996412 1.65 1013084 23 18790 996881 1.85 1015671 24 15817 995645 1.56 1011462 25 18021 997242 1.78 1015263 26 18797 1007412 1.83 1026209 27 15930 1011731 1.55 1027661 28 15750 1018042 1.52 1033792 29 18489 1014216 1.79 1032705 30 15644 1000611 1.54 1016255 31 16685 992640 1.65 1009325 32 18752 991925 1.86 1010677 33 15544 993142 1.54 1008686 34 17399 999686 1.71 1017085 35 18601 989647 1.84 1008248 36 15855 1000698 1.56 1016553 37 15650 990908 1.55 1006558 38 18232 992442 1.80 1010674 39 15310 984733 1.53 1000043 40 15771 982713 1.58 998484 41 17984 985781 1.79 1003765 42 16323 991095 1.62 1007418 43 16942 981728 1.70 998670 44 17978 989169 1.79 1007147 45 16077 976571 1.62 992648 46 16234 978852 1.63 995086 47 17606 972004 1.78 989610 48 15312 970245 1.55 985557 49 15605 962311 1.60 977916 50 17282 957508 1.77 974790 51 15030 951558 1.55 966588 52 16114 946123 1.67 962237 53 17709 940570 1.85 958279 54 15445 939174 1.62 954619 55 15826 933207 1.67 949033 56 17660 932725 1.86 950385 57 14843 940558 1.55 955401 58 15503 936296 1.63 951799 59 17722 939714 1.85 957436 60 14785 929847 1.57 944632 61 15916 924727 1.69 940643 62 16610 915121 1.78 931731 63 14857 909186 1.61 924043 64 16062 904281 1.75 920343 65 17125 900695 1.87 917820 66 14400 896487 1.58 910887 67 14750 893386 1.62 908136 68 16669 887688 1.84 904357 69 14224 885001 1.58 899225 70 14585 878079 1.63 892664 71 16082 874267 1.81 890349 72 14095 872278 1.59 886373 73 15217 858448 1.74 873665 74 15636 858311 1.79 873947 75 13901 854594 1.60 868495 76 15193 848048 1.76 863241 77 16259 846911 1.88 863170 78 13242 838602 1.55 851844 79 14179 833758 1.67 847937 80 15360 828707 1.82 844067 81 13649 819170 1.64 832819 82 14592 812643 1.76 827235 83 15668 812305 1.89 827973 84 14183 802639 1.74 816822 85 13458 794693 1.67 808151 86 14767 786166 1.84 800933 87 14715 778094 1.86 792809 88 16150 760858 2.08 777008 89 14756 771786 1.88 786542 90 12804 767373 1.64 780177 91 13246 758625 1.72 771871 92 13804 755218 1.80 769022 93 12377 750114 1.62 762491 94 12750 739133 1.70 751883 95 14182 732903 1.90 747085 96 11809 718721 1.62 730530 97 11897 699905 1.67 711802 98 12641 652761 1.90 665402 99 7779 450356 1.70 458135 100 8511 403452 2.07 411963 101 12608 661788 1.87 674396 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 137555 137473 50.01 275028 2 117300 113931 50.73 231231 3 128007 129405 49.73 257412 4 115928 143625 44.66 259553 5 52191 186293 21.88 238484 6 31936 101767 23.89 133703 7 27807 105821 20.81 133628 8 28761 96815 22.90 125576 9 25948 85700 23.24 111648 10 27568 94859 22.52 122427 11 30055 91425 24.74 121480 12 29098 87831 24.89 116929 13 29684 86438 25.56 116122 14 31546 88894 26.19 120440 15 30509 81887 27.14 112396 16 28684 77619 26.98 106303 17 33990 84965 28.57 118955 18 33392 83967 28.45 117359 19 31837 80964 28.22 112801 20 29494 77760 27.50 107254 21 30845 75174 29.09 106019 22 30936 76885 28.69 107821 23 29090 74783 28.01 103873 24 27409 69938 28.16 97347 25 30775 75146 29.05 105921 26 27732 71567 27.93 99299 27 29482 72578 28.89 102060 28 27546 69702 28.33 97248 29 28601 71334 28.62 99935 30 27789 67133 29.28 94922 31 26523 68292 27.97 94815 32 25659 64638 28.42 90297 33 29397 66539 30.64 95936 34 27883 69577 28.61 97460 35 33385 74778 30.87 108163 36 27849 65929 29.70 93778 37 28561 68304 29.49 96865 38 25486 64044 28.47 89530 39 26768 63845 29.54 90613 40 29076 63501 31.41 92577 41 25564 62329 29.09 87893 42 25965 64389 28.74 90354 43 25799 62487 29.22 88286 44 24421 61120 28.55 85541 45 30051 67973 30.66 98024 46 23595 57233 29.19 80828 47 23965 57920 29.27 81885 48 24392 58033 29.59 82425 49 23362 58794 28.44 82156 50 22579 55561 28.90 78140 51 22537 54601 29.22 77138 52 22576 55057 29.08 77633 53 23176 54040 30.01 77216 54 22700 54600 29.37 77300 55 22962 54409 29.68 77371 56 21063 52981 28.45 74044 57 22215 54260 29.05 76475 58 21574 53361 28.79 74935 59 20649 50299 29.10 70948 60 21811 51055 29.93 72866 61 19108 48837 28.12 67945 62 19666 48327 28.92 67993 63 21430 48963 30.44 70393 64 19940 48118 29.30 68058 65 19199 46063 29.42 65262 66 20122 47146 29.91 67268 67 18822 48139 28.11 66961 68 21148 50210 29.64 71358 69 18515 44717 29.28 63232 70 18158 43963 29.23 62121 71 18753 43315 30.21 62068 72 17556 42522 29.22 60078 73 17669 43502 28.88 61171 74 16212 41394 28.14 57606 75 16508 41057 28.68 57565 76 16858 40110 29.59 56968 77 16511 40186 29.12 56697 78 16463 40189 29.06 56652 79 15873 39766 28.53 55639 80 15732 39411 28.53 55143 81 15646 38590 28.85 54236 82 15640 39134 28.55 54774 83 15858 37955 29.47 53813 84 17430 41263 29.70 58693 85 15075 37711 28.56 52786 86 14966 36941 28.83 51907 87 14780 36167 29.01 50947 88 14663 36016 28.93 50679 89 15754 37420 29.63 53174 90 15488 36232 29.95 51720 91 14269 35416 28.72 49685 92 13904 34408 28.78 48312 93 13936 34686 28.66 48622 94 14401 35024 29.14 49425 95 14292 34813 29.10 49105 96 13755 33851 28.89 47606 97 14956 36389 29.13 51345 98 13459 31833 29.72 45292 99 11873 0 100.00 11873 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35352 175208 16.79 210560 2 35578 176754 16.76 212332 3 33034 177956 15.66 210990 4 35735 192749 15.64 228484 5 3685 353900 1.03 357585 6 2851 435078 0.65 437929 7 1721 240949 0.71 242670 8 1805 253904 0.71 255709 9 1563 211001 0.74 212564 10 1587 201744 0.78 203331 11 2271 273906 0.82 276177 12 1854 218460 0.84 220314 13 1667 215214 0.77 216881 14 1727 203881 0.84 205608 15 1736 198586 0.87 200322 16 1595 186181 0.85 187776 17 1686 197855 0.84 199541 18 1865 177084 1.04 178949 19 1622 173607 0.93 175229 20 1469 171387 0.85 172856 21 1793 164485 1.08 166278 22 1633 179289 0.90 180922 23 1554 178680 0.86 180234 24 1408 160117 0.87 161525 25 1454 163251 0.88 164705 26 1464 169648 0.86 171112 27 1461 161291 0.90 162752 28 1307 153659 0.84 154966 29 1608 164704 0.97 166312 30 1420 159381 0.88 160801 31 1251 150656 0.82 151907 32 1321 153738 0.85 155059 33 1544 184598 0.83 186142 34 1262 151699 0.83 152961 35 1374 157819 0.86 159193 36 1278 158950 0.80 160228 37 1232 142811 0.86 144043 38 1302 152572 0.85 153874 39 1271 140888 0.89 142159 40 1256 141846 0.88 143102 41 1205 137203 0.87 138408 42 1240 131619 0.93 132859 43 1152 135522 0.84 136674 44 1142 134541 0.84 135683 45 1168 126427 0.92 127595 46 1125 127797 0.87 128922 47 1211 130006 0.92 131217 48 1166 125536 0.92 126702 49 1164 131407 0.88 132571 50 1160 125396 0.92 126556 51 1023 119787 0.85 120810 52 1082 117763 0.91 118845 53 1120 131749 0.84 132869 54 1023 121079 0.84 122102 55 1090 117268 0.92 118358 56 1053 118539 0.88 119592 57 1097 113732 0.96 114829 58 1015 110886 0.91 111901 59 984 115330 0.85 116314 60 1139 112758 1.00 113897 61 1004 112360 0.89 113364 62 1025 113972 0.89 114997 63 1036 112785 0.91 113821 64 851 106267 0.79 107118 65 940 109140 0.85 110080 66 860 103299 0.83 104159 67 971 109814 0.88 110785 68 886 105738 0.83 106624 69 911 105194 0.86 106105 70 901 104629 0.85 105530 71 883 107660 0.81 108543 72 810 99849 0.80 100659 73 832 98182 0.84 99014 74 837 101249 0.82 102086 75 837 97274 0.85 98111 76 748 93772 0.79 94520 77 852 98800 0.85 99652 78 822 92860 0.88 93682 79 876 93286 0.93 94162 80 773 90095 0.85 90868 81 778 88306 0.87 89084 82 803 86888 0.92 87691 83 767 87517 0.87 88284 84 712 86200 0.82 86912 85 800 95498 0.83 96298 86 713 85991 0.82 86704 87 664 84965 0.78 85629 88 720 81904 0.87 82624 89 753 85556 0.87 86309 90 838 84972 0.98 85810 91 755 88396 0.85 89151 92 719 82254 0.87 82973 93 691 79700 0.86 80391 94 734 78565 0.93 79299 95 742 81023 0.91 81765 96 704 76916 0.91 77620 97 708 76191 0.92 76899 98 565 76215 0.74 76780 99 462 0 100.00 462 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47712 226384 17.41 274096 2 38660 182886 17.45 221546 3 39081 188908 17.14 227989 4 38558 185981 17.17 224539 5 7599 382068 1.95 389667 6 7453 521261 1.41 528714 7 8176 717007 1.13 725183 8 8843 701977 1.24 710820 9 9166 661511 1.37 670677 10 8618 679449 1.25 688067 11 8777 668046 1.30 676823 12 8896 628733 1.40 637629 13 8514 649117 1.29 657631 14 8332 649508 1.27 657840 15 8571 667601 1.27 676172 16 7972 643777 1.22 651749 17 8322 642381 1.28 650703 18 8324 641136 1.28 649460 19 7541 592804 1.26 600345 20 7980 630120 1.25 638100 21 7764 598573 1.28 606337 22 7689 575939 1.32 583628 23 7438 567471 1.29 574909 24 7271 546416 1.31 553687 25 7566 543804 1.37 551370 26 7398 544083 1.34 551481 27 7858 585360 1.32 593218 28 6860 553471 1.22 560331 29 7327 539765 1.34 547092 30 7303 526839 1.37 534142 31 6806 519496 1.29 526302 32 6734 503877 1.32 510611 33 6996 499841 1.38 506837 34 6838 497971 1.35 504809 35 7456 516018 1.42 523474 36 6584 507338 1.28 513922 37 6459 506051 1.26 512510 38 6833 532714 1.27 539547 39 6626 483580 1.35 490206 40 6587 511231 1.27 517818 41 6407 480930 1.31 487337 42 6569 493977 1.31 500546 43 6461 468451 1.36 474912 44 6116 463356 1.30 469472 45 6436 467911 1.36 474347 46 5931 473190 1.24 479121 47 5836 461350 1.25 467186 48 6025 451934 1.32 457959 49 5906 463433 1.26 469339 50 5908 452450 1.29 458358 51 5890 443754 1.31 449644 52 5541 423700 1.29 429241 53 5444 420532 1.28 425976 54 5370 414289 1.28 419659 55 5606 429364 1.29 434970 56 5214 413214 1.25 418428 57 5298 430195 1.22 435493 58 4987 412724 1.19 417711 59 5156 395914 1.29 401070 60 5482 408420 1.32 413902 61 5045 392290 1.27 397335 62 5026 387840 1.28 392866 63 5047 390714 1.28 395761 64 4732 378005 1.24 382737 65 4745 385476 1.22 390221 66 4723 370450 1.26 375173 67 4530 372245 1.20 376775 68 4794 385239 1.23 390033 69 4839 372863 1.28 377702 70 4432 357943 1.22 362375 71 4631 355545 1.29 360176 72 4538 353895 1.27 358433 73 4336 351963 1.22 356299 74 4270 352890 1.20 357160 75 4305 349165 1.22 353470 76 4010 335905 1.18 339915 77 4357 335160 1.28 339517 78 4271 337215 1.25 341486 79 4075 342726 1.18 346801 80 4092 330013 1.22 334105 81 4399 330378 1.31 334777 82 4146 326309 1.25 330455 83 4041 323107 1.24 327148 84 4168 319334 1.29 323502 85 3798 317199 1.18 320997 86 3964 313975 1.25 317939 87 3936 313393 1.24 317329 88 3561 300715 1.17 304276 89 3871 300339 1.27 304210 90 3916 300039 1.29 303955 91 3665 298763 1.21 302428 92 3575 293546 1.20 297121 93 3538 291243 1.20 294781 94 3512 290835 1.19 294347 95 3386 284442 1.18 287828 96 3357 278875 1.19 282232 97 3184 279914 1.12 283098 98 2828 267977 1.04 270805 99 1983 0 100.00 1983