CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 44438 67084 39.85 111522 2 41523 73409 36.13 114932 3 40705 66814 37.86 107519 4 42465 56633 42.85 99098 5 42082 50593 45.41 92675 6 41362 42339 49.42 83701 7 47721 43537 52.29 91258 8 22427 47704 31.98 70131 9 19608 44557 30.56 64165 10 19974 43253 31.59 63227 11 21108 44015 32.41 65123 12 20106 43728 31.50 63834 13 20102 45129 30.82 65231 14 19317 45309 29.89 64626 15 18928 45634 29.32 64562 16 17700 45598 27.96 63298 17 16806 44507 27.41 61313 18 17592 45297 27.97 62889 19 17337 44777 27.91 62114 20 17825 45130 28.31 62955 21 17740 46015 27.83 63755 22 17413 45133 27.84 62546 23 17223 44908 27.72 62131 24 16835 45402 27.05 62237 25 16784 44879 27.22 61663 26 16968 44536 27.59 61504 27 16818 45651 26.92 62469 28 17264 45888 27.34 63152 29 16957 44972 27.38 61929 30 16493 45077 26.79 61570 31 16770 44605 27.32 61375 32 16353 43634 27.26 59987 33 16606 44318 27.26 60924 34 17100 44209 27.89 61309 35 16436 44243 27.09 60679 36 16080 44585 26.51 60665 37 15794 43286 26.73 59080 38 15745 43263 26.68 59008 39 16315 44000 27.05 60315 40 15901 43168 26.92 59069 41 16197 43408 27.17 59605 42 16612 44141 27.34 60753 43 15940 43467 26.83 59407 44 15951 42852 27.13 58803 45 16096 42811 27.32 58907 46 16358 43275 27.43 59633 47 16105 42279 27.58 58384 48 16019 42404 27.42 58423 49 16447 42626 27.84 59073 50 15620 42762 26.75 58382 51 15772 42995 26.84 58767 52 15879 43445 26.77 59324 53 15530 41351 27.30 56881 54 15107 41101 26.88 56208 55 15237 40241 27.46 55478 56 15024 39783 27.41 54807 57 15251 40435 27.39 55686 58 15186 40375 27.33 55561 59 15185 39699 27.67 54884 60 14732 40236 26.80 54968 61 14731 38906 27.46 53637 62 14426 39196 26.90 53622 63 14422 38775 27.11 53197 64 14175 38350 26.99 52525 65 14319 38437 27.14 52756 66 14783 38127 27.94 52910 67 14092 37490 27.32 51582 68 13778 37516 26.86 51294 69 13764 36807 27.22 50571 70 13502 36637 26.93 50139 71 13238 35782 27.01 49020 72 13175 35871 26.86 49046 73 12928 35322 26.79 48250 74 12984 34933 27.10 47917 75 12320 34958 26.06 47278 76 12445 34371 26.58 46816 77 12718 34016 27.21 46734 78 12601 34428 26.79 47029 79 12225 33797 26.56 46022 80 12042 33314 26.55 45356 81 12050 33333 26.55 45383 82 11879 32851 26.56 44730 83 11971 32883 26.69 44854 84 12086 32880 26.88 44966 85 11602 31884 26.68 43486 86 11244 31473 26.32 42717 87 11057 31038 26.27 42095 88 10898 30661 26.22 41559 89 10792 30535 26.11 41327 90 10564 30676 25.62 41240 91 10663 30016 26.21 40679 92 10267 29374 25.90 39641 93 10539 29605 26.25 40144 94 10429 29157 26.35 39586 95 10211 29167 25.93 39378 96 10148 29417 25.65 39565 97 9676 28171 25.57 37847 98 9310 26549 25.96 35859 99 7335 21036 25.85 28371 100 9303 26313 26.12 35616 101 8831 26358 25.10 35189 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 53964 91990 36.97 145954 2 30892 85554 26.53 116446 3 15221 83009 15.50 98230 4 9461 85006 10.02 94467 5 6602 76043 7.99 82645 6 6893 72869 8.64 79762 7 3601 91826 3.77 95427 8 1765 99936 1.74 101701 9 1426 95620 1.47 97046 10 1501 91552 1.61 93053 11 1611 91766 1.73 93377 12 1549 90503 1.68 92052 13 1297 89646 1.43 90943 14 1332 89682 1.46 91014 15 1288 91718 1.38 93006 16 1144 90883 1.24 92027 17 1262 89729 1.39 90991 18 1086 89347 1.20 90433 19 1125 88975 1.25 90100 20 1230 93468 1.30 94698 21 1134 94545 1.19 95679 22 1250 93979 1.31 95229 23 1313 94784 1.37 96097 24 1260 95043 1.31 96303 25 1333 92501 1.42 93834 26 1654 92953 1.75 94607 27 1199 94900 1.25 96099 28 1146 94112 1.20 95258 29 1420 95140 1.47 96560 30 1191 95558 1.23 96749 31 1234 93449 1.30 94683 32 1230 94410 1.29 95640 33 1206 95011 1.25 96217 34 1249 93100 1.32 94349 35 1528 93037 1.62 94565 36 1324 93609 1.39 94933 37 1150 91168 1.25 92318 38 1503 92810 1.59 94313 39 1205 92205 1.29 93410 40 1259 92204 1.35 93463 41 1167 92714 1.24 93881 42 1221 92389 1.30 93610 43 1156 90403 1.26 91559 44 1254 91615 1.35 92869 45 1241 91324 1.34 92565 46 1371 90278 1.50 91649 47 1406 90462 1.53 91868 48 1232 92731 1.31 93963 49 1290 89739 1.42 91029 50 1426 89377 1.57 90803 51 1266 90111 1.39 91377 52 1358 90004 1.49 91362 53 1325 88565 1.47 89890 54 1468 88989 1.62 90457 55 1383 87664 1.55 89047 56 1426 88346 1.59 89772 57 1328 88031 1.49 89359 58 1241 87184 1.40 88425 59 1396 86911 1.58 88307 60 1349 87104 1.53 88453 61 1374 85769 1.58 87143 62 1462 85520 1.68 86982 63 1382 84608 1.61 85990 64 1405 84314 1.64 85719 65 1748 83659 2.05 85407 66 1393 82105 1.67 83498 67 1385 79389 1.71 80774 68 1637 80904 1.98 82541 69 1324 79828 1.63 81152 70 1265 78101 1.59 79366 71 1294 78225 1.63 79519 72 1337 77102 1.70 78439 73 1261 76703 1.62 77964 74 1517 75567 1.97 77084 75 1233 76733 1.58 77966 76 1265 73345 1.70 74610 77 1497 73532 2.00 75029 78 1223 72532 1.66 73755 79 1286 70783 1.78 72069 80 1269 71089 1.75 72358 81 1126 70445 1.57 71571 82 1144 68838 1.63 69982 83 1217 70688 1.69 71905 84 1165 69620 1.65 70785 85 1182 68256 1.70 69438 86 1293 68330 1.86 69623 87 1294 67984 1.87 69278 88 1380 65359 2.07 66739 89 1204 65932 1.79 67136 90 1123 65498 1.69 66621 91 1172 64863 1.77 66035 92 1223 65164 1.84 66387 93 1295 64291 1.97 65586 94 1165 62829 1.82 63994 95 1257 62026 1.99 63283 96 1183 61280 1.89 62463 97 1192 55923 2.09 57115 98 1128 51716 2.13 52844 99 640 33676 1.87 34316 100 849 34007 2.44 34856 101 1632 55352 2.86 56984 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 70816 122745 36.59 193561 2 44385 129910 25.47 174295 3 28610 146326 16.35 174936 4 27057 156659 14.73 183716 5 27927 182170 13.29 210097 6 22386 200694 10.03 223080 7 16388 256186 6.01 272574 8 14936 279332 5.08 294268 9 10513 258140 3.91 268653 10 10819 250400 4.14 261219 11 14121 251457 5.32 265578 12 10687 255086 4.02 265773 13 12770 261667 4.65 274437 14 14842 267029 5.27 281871 15 11576 272378 4.08 283954 16 11981 274514 4.18 286495 17 14825 277001 5.08 291826 18 11579 288794 3.85 300373 19 11552 291844 3.81 303396 20 14231 299966 4.53 314197 21 11606 300560 3.72 312166 22 13057 299489 4.18 312546 23 14923 300117 4.74 315040 24 11971 301134 3.82 313105 25 13320 301189 4.24 314509 26 15343 304776 4.79 320119 27 12041 306339 3.78 318380 28 11883 308164 3.71 320047 29 14978 305744 4.67 320722 30 11929 303969 3.78 315898 31 12896 300380 4.12 313276 32 14525 298973 4.63 313498 33 11672 299526 3.75 311198 34 13704 302002 4.34 315706 35 14823 298019 4.74 312842 36 11902 302279 3.79 314181 37 11822 298629 3.81 310451 38 14470 300254 4.60 314724 39 11650 297440 3.77 309090 40 12086 295247 3.93 307333 41 14501 295821 4.67 310322 42 12142 297100 3.93 309242 43 13373 292658 4.37 306031 44 14324 294855 4.63 309179 45 12169 291555 4.01 303724 46 12197 292578 4.00 304775 47 13948 290467 4.58 304415 48 11254 288328 3.76 299582 49 11800 284822 3.98 296622 50 13612 285362 4.55 298974 51 10987 280729 3.77 291716 52 12554 278954 4.31 291508 53 14065 275956 4.85 290021 54 11567 276484 4.02 288051 55 12020 273468 4.21 285488 56 13978 273014 4.87 286992 57 10939 275417 3.82 286356 58 11857 273019 4.16 284876 59 13946 272950 4.86 286896 60 10682 269885 3.81 280567 61 12308 267493 4.40 279801 62 13202 263041 4.78 276243 63 10771 261936 3.95 272707 64 12328 259558 4.53 271886 65 13361 256412 4.95 269773 66 10523 255255 3.96 265778 67 10977 252939 4.16 263916 68 13138 252355 4.95 265493 69 10058 250093 3.87 260151 70 10972 247031 4.25 258003 71 12686 247190 4.88 259876 72 10269 245432 4.02 255701 73 12038 240160 4.77 252198 74 12482 239649 4.95 252131 75 10178 237355 4.11 247533 76 10769 235647 4.37 246416 77 12599 234190 5.11 246789 78 9587 231525 3.98 241112 79 10314 229939 4.29 240253 80 12076 229204 5.00 241280 81 10182 224400 4.34 234582 82 11266 223039 4.81 234305 83 12301 221552 5.26 233853 84 10310 219113 4.49 229423 85 9758 215543 4.33 225301 86 11535 213094 5.14 224629 87 9998 210130 4.54 220128 88 10296 205170 4.78 215466 89 11482 207660 5.24 219142 90 9131 205708 4.25 214839 91 9772 203720 4.58 213492 92 10593 202173 4.98 212766 93 8834 199685 4.24 208519 94 9285 197862 4.48 207147 95 10789 193433 5.28 204222 96 8279 190295 4.17 198574 97 8321 184633 4.31 192954 98 9322 172124 5.14 181446 99 5371 119667 4.30 125038 100 6295 106107 5.60 112402 101 8963 173140 4.92 182103 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 31239 35974 46.48 67213 2 26897 30214 47.10 57111 3 29886 34508 46.41 64394 4 27280 39304 40.97 66584 5 12284 51080 19.39 63364 6 7253 27292 21.00 34545 7 6481 29141 18.19 35622 8 6602 26483 19.95 33085 9 5822 23318 19.98 29140 10 6352 25629 19.86 31981 11 6903 24981 21.65 31884 12 6760 24162 21.86 30922 13 6856 23644 22.48 30500 14 7593 24081 23.97 31674 15 7114 22240 24.24 29354 16 6624 20783 24.17 27407 17 8038 22238 26.55 30276 18 7515 22379 25.14 29894 19 7302 21702 25.18 29004 20 6794 20917 24.52 27711 21 7217 20073 26.45 27290 22 7092 20800 25.43 27892 23 6626 19859 25.02 26485 24 6369 18914 25.19 25283 25 6882 19871 25.72 26753 26 6726 18315 26.86 25041 27 6892 19009 26.61 25901 28 6385 17958 26.23 24343 29 6551 18793 25.85 25344 30 6359 17767 26.36 24126 31 6164 17888 25.63 24052 32 5888 16519 26.28 22407 33 6657 17154 27.96 23811 34 6266 18122 25.69 24388 35 7333 18587 28.29 25920 36 6181 16901 26.78 23082 37 6328 17346 26.73 23674 38 5748 16820 25.47 22568 39 5992 15959 27.30 21951 40 6477 16304 28.43 22781 41 5794 16640 25.83 22434 42 5854 16640 26.02 22494 43 5799 16063 26.53 21862 44 5279 15926 24.90 21205 45 6393 17111 27.20 23504 46 5212 14348 26.65 19560 47 5386 14700 26.81 20086 48 5349 15136 26.11 20485 49 5173 15209 25.38 20382 50 4979 14285 25.85 19264 51 4977 13814 26.49 18791 52 4822 14357 25.14 19179 53 5191 13739 27.42 18930 54 4881 13921 25.96 18802 55 5134 13510 27.54 18644 56 4621 13427 25.60 18048 57 4841 13319 26.66 18160 58 4608 13211 25.86 17819 59 4617 12546 26.90 17163 60 4701 12853 26.78 17554 61 4174 12392 25.20 16566 62 4346 11864 26.81 16210 63 4506 11907 27.45 16413 64 4274 11499 27.10 15773 65 4150 11026 27.35 15176 66 4368 11458 27.60 15826 67 4055 11848 25.50 15903 68 4416 12081 26.77 16497 69 4059 10819 27.28 14878 70 3973 10518 27.42 14491 71 3961 10361 27.66 14322 72 3788 10333 26.83 14121 73 3718 10701 25.79 14419 74 3458 10170 25.37 13628 75 3429 9965 25.60 13394 76 3516 9664 26.68 13180 77 3453 9679 26.29 13132 78 3462 9810 26.08 13272 79 3319 9413 26.07 12732 80 3187 9207 25.71 12394 81 3258 9304 25.94 12562 82 3268 9136 26.35 12404 83 3348 8928 27.27 12276 84 3433 9704 26.13 13137 85 3058 9146 25.06 12204 86 3140 8901 26.08 12041 87 3111 8457 26.89 11568 88 3077 8587 26.38 11664 89 3154 8678 26.66 11832 90 3139 8625 26.68 11764 91 2924 8476 25.65 11400 92 2842 7997 26.22 10839 93 2856 8127 26.00 10983 94 3070 8201 27.24 11271 95 2947 8058 26.78 11005 96 2902 8061 26.47 10963 97 3105 8449 26.87 11554 98 2793 7422 27.34 10215 99 2475 0 100.00 2475 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9370 45710 17.01 55080 2 9850 47275 17.24 57125 3 9198 47168 16.32 56366 4 9748 49944 16.33 59692 5 1152 92054 1.24 93206 6 898 113840 0.78 114738 7 578 62732 0.91 63310 8 608 66126 0.91 66734 9 507 55525 0.90 56032 10 510 52932 0.95 53442 11 689 69265 0.98 69954 12 637 56174 1.12 56811 13 556 54792 1.00 55348 14 538 53254 1.00 53792 15 623 51030 1.21 51653 16 543 47712 1.13 48255 17 579 50538 1.13 51117 18 819 44496 1.81 45315 19 516 43598 1.17 44114 20 530 43571 1.20 44101 21 834 41623 1.96 42457 22 502 44844 1.11 45346 23 545 44710 1.20 45255 24 435 39982 1.08 40417 25 492 40720 1.19 41212 26 563 42807 1.30 43370 27 467 39955 1.16 40422 28 413 38296 1.07 38709 29 492 40551 1.20 41043 30 404 38912 1.03 39316 31 427 37487 1.13 37914 32 427 38099 1.11 38526 33 409 43732 0.93 44141 34 426 37064 1.14 37490 35 452 38571 1.16 39023 36 416 38660 1.06 39076 37 355 35808 0.98 36163 38 421 37328 1.12 37749 39 424 35331 1.19 35755 40 414 34443 1.19 34857 41 376 33186 1.12 33562 42 375 31890 1.16 32265 43 405 32542 1.23 32947 44 353 32386 1.08 32739 45 361 30500 1.17 30861 46 320 30387 1.04 30707 47 353 30828 1.13 31181 48 396 30221 1.29 30617 49 361 31533 1.13 31894 50 369 30325 1.20 30694 51 360 28770 1.24 29130 52 365 28213 1.28 28578 53 405 31055 1.29 31460 54 376 29009 1.28 29385 55 366 28502 1.27 28868 56 336 28282 1.17 28618 57 491 27316 1.77 27807 58 353 27080 1.29 27433 59 346 27174 1.26 27520 60 450 26706 1.66 27156 61 316 26138 1.19 26454 62 405 27221 1.47 27626 63 317 26246 1.19 26563 64 290 24790 1.16 25080 65 294 25482 1.14 25776 66 298 23763 1.24 24061 67 272 25608 1.05 25880 68 297 24747 1.19 25044 69 297 24888 1.18 25185 70 264 24042 1.09 24306 71 284 24800 1.13 25084 72 244 22747 1.06 22991 73 263 22548 1.15 22811 74 264 23368 1.12 23632 75 249 22007 1.12 22256 76 236 21832 1.07 22068 77 256 22595 1.12 22851 78 268 21401 1.24 21669 79 244 20910 1.15 21154 80 227 21063 1.07 21290 81 254 20100 1.25 20354 82 244 19937 1.21 20181 83 234 20382 1.14 20616 84 208 19644 1.05 19852 85 230 21207 1.07 21437 86 227 19347 1.16 19574 87 220 19439 1.12 19659 88 223 18476 1.19 18699 89 255 19281 1.31 19536 90 261 18901 1.36 19162 91 208 19780 1.04 19988 92 222 18961 1.16 19183 93 201 17962 1.11 18163 94 207 17667 1.16 17874 95 214 18298 1.16 18512 96 282 17221 1.61 17503 97 196 16849 1.15 17045 98 165 16601 0.98 16766 99 207 0 100.00 207 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 17853 63806 21.86 81659 2 15874 52075 23.36 67949 3 16741 52013 24.35 68754 4 16138 49499 24.59 65637 5 5787 99672 5.49 105459 6 5906 136339 4.15 142245 7 5602 186728 2.91 192330 8 6212 183257 3.28 189469 9 6928 171924 3.87 178852 10 5880 176283 3.23 182163 11 6412 173048 3.57 179460 12 6202 160788 3.71 166990 13 5720 167248 3.31 172968 14 5541 166210 3.23 171751 15 5728 169034 3.28 174762 16 5051 162901 3.01 167952 17 5449 160454 3.28 165903 18 5380 161284 3.23 166664 19 4875 150468 3.14 155343 20 5082 157778 3.12 162860 21 5389 148760 3.50 154149 22 5183 143974 3.47 149157 23 4839 141956 3.30 146795 24 4938 136339 3.50 141277 25 4917 136504 3.48 141421 26 4810 134733 3.45 139543 27 5206 144549 3.48 149755 28 4371 137660 3.08 142031 29 4735 133760 3.42 138495 30 5046 130768 3.72 135814 31 4420 128049 3.34 132469 32 4346 124563 3.37 128909 33 4630 122855 3.63 127485 34 4622 121048 3.68 125670 35 4655 125324 3.58 129979 36 4276 122852 3.36 127128 37 4014 122092 3.18 126106 38 4402 128082 3.32 132484 39 4512 118564 3.67 123076 40 4117 123074 3.24 127191 41 4178 117230 3.44 121408 42 4352 118492 3.54 122844 43 4015 112913 3.43 116928 44 3985 111897 3.44 115882 45 3909 111676 3.38 115585 46 3604 113290 3.08 116894 47 3745 110133 3.29 113878 48 3915 107839 3.50 111754 49 3494 108900 3.11 112394 50 3723 107407 3.35 111130 51 3784 104465 3.50 108249 52 3487 100514 3.35 104001 53 3308 100362 3.19 103670 54 3257 97307 3.24 100564 55 3159 100437 3.05 103596 56 3326 97536 3.30 100862 57 3346 99911 3.24 103257 58 3014 96435 3.03 99449 59 3253 93117 3.38 96370 60 3295 95908 3.32 99203 61 3171 91598 3.35 94769 62 3081 91375 3.26 94456 63 3073 91090 3.26 94163 64 3028 87893 3.33 90921 65 2932 88998 3.19 91930 66 3078 85888 3.46 88966 67 2703 86588 3.03 89291 68 2850 88280 3.13 91130 69 3096 86359 3.46 89455 70 2708 83325 3.15 86033 71 2807 81851 3.32 84658 72 2813 80692 3.37 83505 73 2727 79884 3.30 82611 74 2714 80439 3.26 83153 75 2714 79768 3.29 82482 76 2393 77001 3.01 79394 77 2661 76640 3.36 79301 78 2704 76670 3.41 79374 79 2414 77486 3.02 79900 80 2634 75191 3.38 77825 81 2706 74901 3.49 77607 82 2545 73195 3.36 75740 83 2449 73186 3.24 75635 84 2592 72397 3.46 74989 85 2323 71828 3.13 74151 86 2305 71048 3.14 73353 87 2530 70528 3.46 73058 88 2126 68416 3.01 70542 89 2276 67988 3.24 70264 90 2386 67515 3.41 69901 91 2341 67208 3.37 69549 92 2169 65829 3.19 67998 93 2133 65116 3.17 67249 94 2032 64180 3.07 66212 95 2017 63312 3.09 65329 96 2031 62389 3.15 64420 97 1797 62204 2.81 64001 98 1570 59287 2.58 60857 99 1179 0 100.00 1179