/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-184_S18_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-184_S18_L003_R2_001_val_2.fq.gz
Data processed at 23:49 on 2020-03-24
Alignment Stats
Sequence pairs analysed in total
20689148
Paired-end alignments with a unique best hit
8444730
Pairs without alignments under any condition
10305796
Pairs that did not map uniquely
1938622
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
251839676
Methylated C's in CpG context
9669457
Methylated C's in CHG context
1217679
Methylated C's in CHH context
3983200
Methylated C's in Unknown context
60694
Unmethylated C's in CpG context
25706227
Unmethylated C's in CHG context
53487968
Unmethylated C's in CHH context
157775145
Unmethylated C's in Unknown context
557312
Percentage methylation (CpG context)
27.3%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
2.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4167553
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4277175
original bottom strand
Deduplication
Alignments analysed
8444728
Unique alignments
6296462
Duplicates removed
2148266
Duplicated alignments were found at 1332291 different positions