/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-181_S16_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-181_S16_L003_R2_001_val_2.fq.gz
Data processed at 23:49 on 2020-03-24
Alignment Stats
Sequence pairs analysed in total
27212918
Paired-end alignments with a unique best hit
10790981
Pairs without alignments under any condition
14282015
Pairs that did not map uniquely
2139922
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
336107175
Methylated C's in CpG context
13211112
Methylated C's in CHG context
1652081
Methylated C's in CHH context
3893943
Methylated C's in Unknown context
60101
Unmethylated C's in CpG context
34596724
Unmethylated C's in CHG context
71273976
Unmethylated C's in CHH context
211479339
Unmethylated C's in Unknown context
733272
Percentage methylation (CpG context)
27.6%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5313318
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5477662
original bottom strand
Deduplication
Alignments analysed
10790980
Unique alignments
8210265
Duplicates removed
2580715
Duplicated alignments were found at 1499838 different positions