CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 121396 195965 38.25 317361 2 110781 212832 34.23 323613 3 105553 191742 35.50 297295 4 111129 164374 40.34 275503 5 108055 147116 42.35 255171 6 108781 123093 46.91 231874 7 121234 119467 50.37 240701 8 60611 136828 30.70 197439 9 54292 128959 29.63 183251 10 54857 123862 30.69 178719 11 57265 126119 31.23 183384 12 56324 126260 30.85 182584 13 55381 128369 30.14 183750 14 52586 128680 29.01 181266 15 51676 129243 28.56 180919 16 48328 128851 27.28 177179 17 46230 125068 26.99 171298 18 47364 127420 27.10 174784 19 46712 128664 26.64 175376 20 47170 130657 26.53 177827 21 47881 130353 26.86 178234 22 46936 129253 26.64 176189 23 46307 127851 26.59 174158 24 45840 128456 26.30 174296 25 45452 126186 26.48 171638 26 45086 125923 26.36 171009 27 44862 128578 25.87 173440 28 46617 127578 26.76 174195 29 44919 127119 26.11 172038 30 44100 127386 25.72 171486 31 45222 125460 26.49 170682 32 44180 123444 26.36 167624 33 44300 124310 26.27 168610 34 45407 123462 26.89 168869 35 44799 123235 26.66 168034 36 43770 123761 26.13 167531 37 43233 120716 26.37 163949 38 42690 119684 26.29 162374 39 43375 122504 26.15 165879 40 42943 120237 26.32 163180 41 43166 120749 26.33 163915 42 43708 121849 26.40 165557 43 42841 120456 26.24 163297 44 42840 119155 26.45 161995 45 43099 118722 26.63 161821 46 43329 118843 26.72 162172 47 42654 116432 26.81 159086 48 42446 116269 26.74 158715 49 43171 117041 26.95 160212 50 42010 116545 26.50 158555 51 42418 115815 26.81 158233 52 42266 117986 26.37 160252 53 40711 112068 26.65 152779 54 40397 110922 26.70 151319 55 40287 109099 26.97 149386 56 39238 107822 26.68 147060 57 39665 109501 26.59 149166 58 39720 108395 26.82 148115 59 39493 106958 26.97 146451 60 38433 106675 26.49 145108 61 38382 104852 26.80 143234 62 37477 104889 26.32 142366 63 37201 103508 26.44 140709 64 37154 102292 26.64 139446 65 36897 101560 26.65 138457 66 37426 101561 26.93 138987 67 36558 98917 26.99 135475 68 35584 97635 26.71 133219 69 35389 97318 26.67 132707 70 35022 96316 26.67 131338 71 34278 94580 26.60 128858 72 33600 94264 26.28 127864 73 33667 92138 26.76 125805 74 33095 90946 26.68 124041 75 32428 90536 26.37 122964 76 32005 89730 26.29 121735 77 32147 88137 26.73 120284 78 32046 88525 26.58 120571 79 31343 86640 26.57 117983 80 30705 86675 26.16 117380 81 30416 85564 26.23 115980 82 29509 84273 25.93 113782 83 30291 84256 26.44 114547 84 29448 83328 26.11 112776 85 29027 82127 26.11 111154 86 28310 80864 25.93 109174 87 27389 79517 25.62 106906 88 27554 79978 25.62 107532 89 26967 78034 25.68 105001 90 26789 77720 25.63 104509 91 26445 76489 25.69 102934 92 25972 75915 25.49 101887 93 26122 75438 25.72 101560 94 25616 75023 25.45 100639 95 25108 73184 25.54 98292 96 25319 73765 25.55 99084 97 24257 70893 25.49 95150 98 22885 66658 25.56 89543 99 18115 51885 25.88 70000 100 23347 66174 26.08 89521 101 21696 66025 24.73 87721 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 147531 272980 35.08 420511 2 82758 256202 24.42 338960 3 36271 244124 12.94 280395 4 20114 251060 7.42 271174 5 12378 228699 5.13 241077 6 10637 217286 4.67 227923 7 8233 266538 3.00 274771 8 3824 287164 1.31 290988 9 3433 271527 1.25 274960 10 3345 260914 1.27 264259 11 3368 262411 1.27 265779 12 3337 261582 1.26 264919 13 3061 254167 1.19 257228 14 2754 252483 1.08 255237 15 2833 258101 1.09 260934 16 2547 258058 0.98 260605 17 2503 254408 0.97 256911 18 2454 252012 0.96 254466 19 2376 252760 0.93 255136 20 2433 264065 0.91 266498 21 2557 266339 0.95 268896 22 2623 262811 0.99 265434 23 2673 266847 0.99 269520 24 2608 269021 0.96 271629 25 2523 262263 0.95 264786 26 2819 262201 1.06 265020 27 2515 266965 0.93 269480 28 2603 263479 0.98 266082 29 2758 266360 1.02 269118 30 2613 268618 0.96 271231 31 2657 261756 1.00 264413 32 2703 265206 1.01 267909 33 2772 266177 1.03 268949 34 2773 262679 1.04 265452 35 2817 261498 1.07 264315 36 2779 262329 1.05 265108 37 2911 255256 1.13 258167 38 2854 258451 1.09 261305 39 2879 258035 1.10 260914 40 2726 256031 1.05 258757 41 2877 255251 1.11 258128 42 2965 255609 1.15 258574 43 2786 250605 1.10 253391 44 2903 253706 1.13 256609 45 3025 252127 1.19 255152 46 3029 249967 1.20 252996 47 2929 247939 1.17 250868 48 3089 252209 1.21 255298 49 2960 245698 1.19 248658 50 3058 245624 1.23 248682 51 3105 247415 1.24 250520 52 3142 244327 1.27 247469 53 3205 240751 1.31 243956 54 3204 242388 1.30 245592 55 3233 237506 1.34 240739 56 3210 238848 1.33 242058 57 3267 235952 1.37 239219 58 3174 233608 1.34 236782 59 3121 233499 1.32 236620 60 3079 231249 1.31 234328 61 3166 229075 1.36 232241 62 3201 227945 1.38 231146 63 3090 225496 1.35 228586 64 3202 222806 1.42 226008 65 3343 222067 1.48 225410 66 3080 217628 1.40 220708 67 3051 212020 1.42 215071 68 3048 212688 1.41 215736 69 3157 210210 1.48 213367 70 3081 206611 1.47 209692 71 2912 205093 1.40 208005 72 2827 202871 1.37 205698 73 2841 200143 1.40 202984 74 2958 198777 1.47 201735 75 2885 198348 1.43 201233 76 2735 192071 1.40 194806 77 2830 191607 1.46 194437 78 2702 189267 1.41 191969 79 2766 183266 1.49 186032 80 2706 183809 1.45 186515 81 2767 180788 1.51 183555 82 2578 178570 1.42 181148 83 2647 179930 1.45 182577 84 2745 179422 1.51 182167 85 2684 175053 1.51 177737 86 2573 175008 1.45 177581 87 2560 175213 1.44 177773 88 2725 170859 1.57 173584 89 2492 168464 1.46 170956 90 2559 168400 1.50 170959 91 2476 165971 1.47 168447 92 2566 166174 1.52 168740 93 2642 163425 1.59 166067 94 2472 159344 1.53 161816 95 2511 157897 1.57 160408 96 2460 155990 1.55 158450 97 2444 143706 1.67 146150 98 2178 130668 1.64 132846 99 1405 84792 1.63 86197 100 1530 85945 1.75 87475 101 3451 142313 2.37 145764 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 181219 363677 33.26 544896 2 86121 381196 18.43 467317 3 43323 426718 9.22 470041 4 35563 465996 7.09 501559 5 31970 544690 5.54 576660 6 26224 591412 4.25 617636 7 22887 736141 3.02 759028 8 13942 790615 1.73 804557 9 10720 735781 1.44 746501 10 10733 717559 1.47 728292 11 12293 717995 1.68 730288 12 10513 724697 1.43 735210 13 11412 737796 1.52 749208 14 12154 756538 1.58 768692 15 10928 773462 1.39 784390 16 10507 782882 1.32 793389 17 12199 786782 1.53 798981 18 10868 813159 1.32 824027 19 10801 828669 1.29 839470 20 12159 854295 1.40 866454 21 11022 853839 1.27 864861 22 11719 856448 1.35 868167 23 12566 859466 1.44 872032 24 11277 862665 1.29 873942 25 11580 866805 1.32 878385 26 12724 869930 1.44 882654 27 11428 874201 1.29 885629 28 10933 874155 1.24 885088 29 12429 872608 1.40 885037 30 11078 865452 1.26 876530 31 11162 854987 1.29 866149 32 12254 854499 1.41 866753 33 10914 851726 1.27 862640 34 11777 855692 1.36 867469 35 12319 847214 1.43 859533 36 11041 852118 1.28 863159 37 11489 841471 1.35 852960 38 12080 844232 1.41 856312 39 10664 836115 1.26 846779 40 10987 829991 1.31 840978 41 11995 833374 1.42 845369 42 11061 833494 1.31 844555 43 11311 823021 1.36 834332 44 11979 824536 1.43 836515 45 10777 814400 1.31 825177 46 10814 813261 1.31 824075 47 11949 808056 1.46 820005 48 10535 803559 1.29 814094 49 10672 794476 1.33 805148 50 11517 786936 1.44 798453 51 10274 777091 1.30 787365 52 10863 772085 1.39 782948 53 11383 762159 1.47 773542 54 10374 759922 1.35 770296 55 10628 752996 1.39 763624 56 11405 749304 1.50 760709 57 10061 752918 1.32 762979 58 10531 746360 1.39 756891 59 11315 743173 1.50 754488 60 9845 733440 1.32 743285 61 10324 725340 1.40 735664 62 10632 713856 1.47 724488 63 9772 707906 1.36 717678 64 10220 700181 1.44 710401 65 10717 695974 1.52 706691 66 9398 688259 1.35 697657 67 9762 683598 1.41 693360 68 10282 678457 1.49 688739 69 9207 671420 1.35 680627 70 9277 662209 1.38 671486 71 10148 656266 1.52 666414 72 8913 652934 1.35 661847 73 9764 640694 1.50 650458 74 9769 640138 1.50 649907 75 9041 632006 1.41 641047 76 8930 629353 1.40 638283 77 9908 620770 1.57 630678 78 8455 614345 1.36 622800 79 8857 609904 1.43 618761 80 9417 602653 1.54 612070 81 8460 592376 1.41 600836 82 8834 585948 1.49 594782 83 9389 583806 1.58 593195 84 8422 576128 1.44 584550 85 8751 566461 1.52 575212 86 8955 558676 1.58 567631 87 8066 554159 1.43 562225 88 8544 548370 1.53 556914 89 8806 542335 1.60 551141 90 7814 538136 1.43 545950 91 8089 531118 1.50 539207 92 8191 526870 1.53 535061 93 7474 519930 1.42 527404 94 7611 513700 1.46 521311 95 8336 506543 1.62 514879 96 7380 495244 1.47 502624 97 7270 481202 1.49 488472 98 7460 446198 1.64 453658 99 4661 308275 1.49 312936 100 4964 274903 1.77 279867 101 7678 452927 1.67 460605 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 77713 90644 46.16 168357 2 67570 78432 46.28 146002 3 74413 89512 45.39 163925 4 68281 101395 40.24 169676 5 30403 133614 18.54 164017 6 18455 70859 20.66 89314 7 16085 74556 17.75 90641 8 16602 68025 19.62 84627 9 14791 60282 19.70 75073 10 16417 66103 19.89 82520 11 17337 63726 21.39 81063 12 16870 60706 21.75 77576 13 17152 59507 22.37 76659 14 17993 60545 22.91 78538 15 17473 56438 23.64 73911 16 16546 53387 23.66 69933 17 19822 58518 25.30 78340 18 19358 56857 25.40 76215 19 18270 55180 24.87 73450 20 16798 53090 24.04 69888 21 18129 51490 26.04 69619 22 17336 51797 25.08 69133 23 16632 50845 24.65 67477 24 15641 47687 24.70 63328 25 17163 51086 25.15 68249 26 16004 47567 25.18 63571 27 16833 48413 25.80 65246 28 15789 45853 25.61 61642 29 16026 47704 25.15 63730 30 15354 45355 25.29 60709 31 14905 44772 24.98 59677 32 14503 42584 25.41 57087 33 16486 43457 27.50 59943 34 15179 45157 25.16 60336 35 17750 47817 27.07 65567 36 15461 43314 26.31 58775 37 15493 43302 26.35 58795 38 14155 42193 25.12 56348 39 14419 41238 25.91 55657 40 15627 41212 27.49 56839 41 14022 40835 25.56 54857 42 13970 41357 25.25 55327 43 14158 40294 26.00 54452 44 13203 39308 25.14 52511 45 15890 42390 27.26 58280 46 12871 36359 26.14 49230 47 13061 36915 26.13 49976 48 12907 37368 25.67 50275 49 12659 37209 25.39 49868 50 11936 35514 25.15 47450 51 12081 34686 25.83 46767 52 12027 34996 25.58 47023 53 12353 33840 26.74 46193 54 12114 34092 26.22 46206 55 12236 34480 26.19 46716 56 11313 32648 25.73 43961 57 11706 33541 25.87 45247 58 11412 32244 26.14 43656 59 11148 31126 26.37 42274 60 11348 31774 26.32 43122 61 10108 30119 25.13 40227 62 10250 29854 25.56 40104 63 11035 29895 26.96 40930 64 10395 29140 26.29 39535 65 9974 27465 26.64 37439 66 10729 28443 27.39 39172 67 9700 29460 24.77 39160 68 10454 29927 25.89 40381 69 9758 26853 26.65 36611 70 9525 26738 26.27 36263 71 9647 26017 27.05 35664 72 8881 25595 25.76 34476 73 9084 26170 25.77 35254 74 8249 24612 25.10 32861 75 8522 24651 25.69 33173 76 8630 24196 26.29 32826 77 8320 24033 25.72 32353 78 8613 24202 26.25 32815 79 8246 24077 25.51 32323 80 8046 23378 25.60 31424 81 7842 23013 25.42 30855 82 7851 23231 25.26 31082 83 7987 22296 26.37 30283 84 8551 23931 26.33 32482 85 7438 22190 25.10 29628 86 7473 21889 25.45 29362 87 7396 21038 26.01 28434 88 7433 20844 26.29 28277 89 7587 21515 26.07 29102 90 7514 21401 25.99 28915 91 7050 20636 25.46 27686 92 6914 20111 25.58 27025 93 7108 20049 26.17 27157 94 7086 19702 26.45 26788 95 7182 19938 26.48 27120 96 6992 19699 26.20 26691 97 7436 20793 26.34 28229 98 6588 18316 26.45 24904 99 5988 0 100.00 5988 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 23900 119465 16.67 143365 2 24855 123329 16.77 148184 3 23107 124461 15.66 147568 4 24368 129018 15.89 153386 5 2339 238885 0.97 241224 6 1854 294164 0.63 296018 7 1142 160703 0.71 161845 8 1099 169087 0.65 170186 9 999 141279 0.70 142278 10 1034 134340 0.76 135374 11 1370 175643 0.77 177013 12 1075 142233 0.75 143308 13 1052 140142 0.75 141194 14 1051 135655 0.77 136706 15 1011 129108 0.78 130119 16 1004 120548 0.83 121552 17 1056 127406 0.82 128462 18 1087 114857 0.94 115944 19 933 111920 0.83 112853 20 907 110432 0.81 111339 21 1009 106150 0.94 107159 22 1009 113665 0.88 114674 23 924 112366 0.82 113290 24 828 102215 0.80 103043 25 801 103432 0.77 104233 26 964 108190 0.88 109154 27 890 101196 0.87 102086 28 779 96333 0.80 97112 29 871 102560 0.84 103431 30 868 99191 0.87 100059 31 785 95149 0.82 95934 32 796 96430 0.82 97226 33 887 111115 0.79 112002 34 749 93951 0.79 94700 35 792 97028 0.81 97820 36 767 96463 0.79 97230 37 749 88816 0.84 89565 38 776 92995 0.83 93771 39 741 87528 0.84 88269 40 739 87198 0.84 87937 41 732 83492 0.87 84224 42 726 79966 0.90 80692 43 693 82135 0.84 82828 44 701 81884 0.85 82585 45 643 77078 0.83 77721 46 660 77078 0.85 77738 47 748 78858 0.94 79606 48 671 76009 0.88 76680 49 715 78396 0.90 79111 50 624 75911 0.82 76535 51 603 71708 0.83 72311 52 615 70277 0.87 70892 53 683 78421 0.86 79104 54 608 71852 0.84 72460 55 588 70613 0.83 71201 56 629 71160 0.88 71789 57 666 67674 0.97 68340 58 606 66837 0.90 67443 59 537 67886 0.78 68423 60 649 66501 0.97 67150 61 568 65362 0.86 65930 62 583 66609 0.87 67192 63 600 65659 0.91 66259 64 528 61961 0.84 62489 65 573 63849 0.89 64422 66 510 60030 0.84 60540 67 548 63443 0.86 63991 68 501 61403 0.81 61904 69 513 60971 0.83 61484 70 502 60535 0.82 61037 71 500 61362 0.81 61862 72 519 57681 0.89 58200 73 485 56506 0.85 56991 74 480 57926 0.82 58406 75 473 55819 0.84 56292 76 404 53575 0.75 53979 77 418 55925 0.74 56343 78 442 53024 0.83 53466 79 473 52630 0.89 53103 80 432 51915 0.83 52347 81 404 50181 0.80 50585 82 422 49006 0.85 49428 83 444 50105 0.88 50549 84 386 48572 0.79 48958 85 437 52321 0.83 52758 86 386 48169 0.79 48555 87 357 47526 0.75 47883 88 399 45290 0.87 45689 89 440 47188 0.92 47628 90 425 46568 0.90 46993 91 387 47825 0.80 48212 92 399 45896 0.86 46295 93 372 43867 0.84 44239 94 384 43282 0.88 43666 95 408 44565 0.91 44973 96 402 42426 0.94 42828 97 338 41346 0.81 41684 98 312 41026 0.75 41338 99 235 0 100.00 235 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 33872 168823 16.71 202695 2 26909 138509 16.27 165418 3 26882 137490 16.35 164372 4 25945 131491 16.48 157436 5 4386 260643 1.65 265029 6 4014 355101 1.12 359115 7 4824 486265 0.98 491089 8 4941 478392 1.02 483333 9 4985 449652 1.10 454637 10 4931 460710 1.06 465641 11 5097 449734 1.12 454831 12 4906 420773 1.15 425679 13 4738 433337 1.08 438075 14 4737 432789 1.08 437526 15 4745 440447 1.07 445192 16 4497 420833 1.06 425330 17 4700 417145 1.11 421845 18 4570 414488 1.09 419058 19 4268 389521 1.08 393789 20 4460 407635 1.08 412095 21 4249 387214 1.09 391463 22 4342 372824 1.15 377166 23 4141 366984 1.12 371125 24 3893 353050 1.09 356943 25 4245 351555 1.19 355800 26 4014 347144 1.14 351158 27 4283 370443 1.14 374726 28 3976 352297 1.12 356273 29 3949 343359 1.14 347308 30 3880 335486 1.14 339366 31 3767 329704 1.13 333471 32 3621 320368 1.12 323989 33 3767 317402 1.17 321169 34 3782 313800 1.19 317582 35 4075 321855 1.25 325930 36 3749 317147 1.17 320896 37 3646 315100 1.14 318746 38 3827 327436 1.16 331263 39 3616 301850 1.18 305466 40 3634 314665 1.14 318299 41 3444 298090 1.14 301534 42 3453 303872 1.12 307325 43 3350 290716 1.14 294066 44 3343 287935 1.15 291278 45 3394 287501 1.17 290895 46 3414 291368 1.16 294782 47 3258 282650 1.14 285908 48 3261 276457 1.17 279718 49 3087 280985 1.09 284072 50 3141 275991 1.13 279132 51 3197 269798 1.17 272995 52 2963 258490 1.13 261453 53 2878 256871 1.11 259749 54 2773 251410 1.09 254183 55 2916 256813 1.12 259729 56 2789 249381 1.11 252170 57 2870 256155 1.11 259025 58 2723 247346 1.09 250069 59 2736 238300 1.14 241036 60 2659 245581 1.07 248240 61 2655 234049 1.12 236704 62 2715 231919 1.16 234634 63 2611 232797 1.11 235408 64 2523 225057 1.11 227580 65 2563 226012 1.12 228575 66 2408 218916 1.09 221324 67 2506 219169 1.13 221675 68 2547 225562 1.12 228109 69 2542 217806 1.15 220348 70 2316 211441 1.08 213757 71 2452 209223 1.16 211675 72 2317 206464 1.11 208781 73 2345 205027 1.13 207372 74 2299 205925 1.10 208224 75 2247 202889 1.10 205136 76 2156 196227 1.09 198383 77 2199 194320 1.12 196519 78 2190 194741 1.11 196931 79 2212 195815 1.12 198027 80 2137 190432 1.11 192569 81 2211 190461 1.15 192672 82 2146 186992 1.13 189138 83 2103 185504 1.12 187607 84 2178 182494 1.18 184672 85 2075 181305 1.13 183380 86 1993 180099 1.09 182092 87 1980 177686 1.10 179666 88 1925 172713 1.10 174638 89 1937 172075 1.11 174012 90 1917 170756 1.11 172673 91 1936 169192 1.13 171128 92 1852 168137 1.09 169989 93 1790 165525 1.07 167315 94 1794 162747 1.09 164541 95 1775 160347 1.09 162122 96 1755 157422 1.10 159177 97 1686 156304 1.07 157990 98 1474 149708 0.97 151182 99 1024 0 100.00 1024