EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6492386 lines in total Total number of methylation call strings processed: 12984772 Final Cytosine Methylation Report ================================= Total number of C's analysed: 139836026 Total methylated C's in CpG context: 5749134 Total methylated C's in CHG context: 652679 Total methylated C's in CHH context: 1958750 Total C to T conversions in CpG context: 13380784 Total C to T conversions in CHG context: 28960958 Total C to T conversions in CHH context: 89133721 C methylated in CpG context: 30.1% C methylated in CHG context: 2.2% C methylated in CHH context: 2.2%