/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-161_S8_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-161_S8_L002_R2_001_val_2.fq.gz
Data processed at 23:49 on 2020-03-24
Alignment Stats
Sequence pairs analysed in total
24510805
Paired-end alignments with a unique best hit
8593707
Pairs without alignments under any condition
13929047
Pairs that did not map uniquely
1988051
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
251244640
Methylated C's in CpG context
9311185
Methylated C's in CHG context
1241250
Methylated C's in CHH context
3334595
Methylated C's in Unknown context
63649
Unmethylated C's in CpG context
25878911
Unmethylated C's in CHG context
52710364
Unmethylated C's in CHH context
158768335
Unmethylated C's in Unknown context
546831
Percentage methylation (CpG context)
26.5%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
2.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4237007
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4356698
original bottom strand
Deduplication
Alignments analysed
8593705
Unique alignments
6330826
Duplicates removed
2262879
Duplicated alignments were found at 1443182 different positions
