EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8992066 lines in total Total number of methylation call strings processed: 17984132 Final Cytosine Methylation Report ================================= Total number of C's analysed: 176538868 Total methylated C's in CpG context: 7344361 Total methylated C's in CHG context: 912079 Total methylated C's in CHH context: 2297548 Total C to T conversions in CpG context: 16933790 Total C to T conversions in CHG context: 36262599 Total C to T conversions in CHH context: 112788491 C methylated in CpG context: 30.3% C methylated in CHG context: 2.5% C methylated in CHH context: 2.0%