EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8409770 lines in total Total number of methylation call strings processed: 16819540 Final Cytosine Methylation Report ================================= Total number of C's analysed: 181742375 Total methylated C's in CpG context: 7874020 Total methylated C's in CHG context: 929405 Total methylated C's in CHH context: 2251146 Total C to T conversions in CpG context: 16740253 Total C to T conversions in CHG context: 36920601 Total C to T conversions in CHH context: 117026950 C methylated in CpG context: 32.0% C methylated in CHG context: 2.5% C methylated in CHH context: 1.9%