CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 150577 217467 40.91 368044 2 143356 238857 37.51 382213 3 138386 206774 40.09 345160 4 147325 162979 47.48 310304 5 140601 138189 50.43 278790 6 140663 117724 54.44 258387 7 156970 118202 57.04 275172 8 76341 129073 37.16 205414 9 68150 119885 36.24 188035 10 67826 117395 36.62 185221 11 70699 120561 36.96 191260 12 68585 124127 35.59 192712 13 68118 128212 34.70 196330 14 64333 127232 33.58 191565 15 62884 129458 32.69 192342 16 58998 128118 31.53 187116 17 56120 124670 31.04 180790 18 56583 126679 30.88 183262 19 55549 127494 30.35 183043 20 56537 129034 30.47 185571 21 56196 130041 30.17 186237 22 55437 128342 30.17 183779 23 55238 127287 30.26 182525 24 54319 127753 29.83 182072 25 53984 126552 29.90 180536 26 53035 124903 29.81 177938 27 53274 128301 29.34 181575 28 54829 127395 30.09 182224 29 53389 129938 29.12 183327 30 53027 128299 29.24 181326 31 53810 126026 29.92 179836 32 52620 122961 29.97 175581 33 52779 123826 29.89 176605 34 53820 123202 30.40 177022 35 53435 122648 30.35 176083 36 52460 124695 29.61 177155 37 51187 122410 29.49 173597 38 51112 121975 29.53 173087 39 51870 124648 29.39 176518 40 51865 122152 29.80 174017 41 51434 122448 29.58 173882 42 52191 123694 29.67 175885 43 51996 122022 29.88 174018 44 51413 121530 29.73 172943 45 52224 121538 30.05 173762 46 52326 121580 30.09 173906 47 51752 120127 30.11 171879 48 51438 120073 29.99 171511 49 52664 120555 30.40 173219 50 51243 121937 29.59 173180 51 51824 121959 29.82 173783 52 51448 125457 29.08 176905 53 50589 119848 29.68 170437 54 49800 118932 29.51 168732 55 49637 115457 30.07 165094 56 48825 114209 29.95 163034 57 49630 114932 30.16 164562 58 49420 115387 29.99 164807 59 49510 114725 30.15 164235 60 48361 114464 29.70 162825 61 48822 113733 30.03 162555 62 47533 114080 29.41 161613 63 47267 112564 29.57 159831 64 47095 112766 29.46 159861 65 47693 111121 30.03 158814 66 48065 111339 30.15 159404 67 47411 109411 30.23 156822 68 46653 109008 29.97 155661 69 46176 108403 29.87 154579 70 45834 107930 29.81 153764 71 45096 106204 29.81 151300 72 44581 106006 29.60 150587 73 44303 104741 29.72 149044 74 44184 103884 29.84 148068 75 43193 103804 29.38 146997 76 42771 101517 29.64 144288 77 42907 101056 29.80 143963 78 43533 102149 29.88 145682 79 43028 99717 30.14 142745 80 41635 99693 29.46 141328 81 41279 98796 29.47 140075 82 40282 97604 29.21 137886 83 40925 98408 29.37 139333 84 40623 98394 29.22 139017 85 40713 96245 29.73 136958 86 39649 94747 29.50 134396 87 38409 94146 28.98 132555 88 38991 93888 29.34 132879 89 38240 91930 29.38 130170 90 38221 91957 29.36 130178 91 37701 90379 29.44 128080 92 36827 90051 29.03 126878 93 37127 90689 29.05 127816 94 37033 89152 29.35 126185 95 36450 87874 29.32 124324 96 36541 89459 29.00 126000 97 35308 85916 29.13 121224 98 32931 80720 28.98 113651 99 26146 62864 29.37 89010 100 33841 80671 29.55 114512 101 31480 80089 28.22 111569 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 188808 274204 40.78 463012 2 113060 257286 30.53 370346 3 51545 248492 17.18 300037 4 27698 251622 9.92 279320 5 17480 229259 7.08 246739 6 16567 224935 6.86 241502 7 11228 272346 3.96 283574 8 4847 293329 1.63 298176 9 4095 279182 1.45 283277 10 4012 270556 1.46 274568 11 4069 276062 1.45 280131 12 3989 278134 1.41 282123 13 3682 267587 1.36 271269 14 3354 268430 1.23 271784 15 3409 274383 1.23 277792 16 2979 273115 1.08 276094 17 2884 269417 1.06 272301 18 2856 269996 1.05 272852 19 2755 269530 1.01 272285 20 2823 280268 1.00 283091 21 2817 284979 0.98 287796 22 2805 280882 0.99 283687 23 2839 285614 0.98 288453 24 2799 287036 0.97 289835 25 2772 279372 0.98 282144 26 2968 280796 1.05 283764 27 2810 284611 0.98 287421 28 2635 281978 0.93 284613 29 2880 284769 1.00 287649 30 2775 288196 0.95 290971 31 2829 281660 0.99 284489 32 2753 284229 0.96 286982 33 2872 285269 1.00 288141 34 2760 281244 0.97 284004 35 3050 281073 1.07 284123 36 2940 283396 1.03 286336 37 2868 275399 1.03 278267 38 3016 280647 1.06 283663 39 2897 279457 1.03 282354 40 2807 276706 1.00 279513 41 2818 275832 1.01 278650 42 2945 276762 1.05 279707 43 2795 273565 1.01 276360 44 2845 277289 1.02 280134 45 2919 277002 1.04 279921 46 2867 273619 1.04 276486 47 2935 273707 1.06 276642 48 2968 278546 1.05 281514 49 2931 272437 1.06 275368 50 3122 271911 1.14 275033 51 2942 273240 1.07 276182 52 3077 272684 1.12 275761 53 3018 269830 1.11 272848 54 3143 272096 1.14 275239 55 3134 267197 1.16 270331 56 3157 269471 1.16 272628 57 3127 268003 1.15 271130 58 3015 265886 1.12 268901 59 3162 266411 1.17 269573 60 3077 266293 1.14 269370 61 3188 263240 1.20 266428 62 3147 264813 1.17 267960 63 3145 262556 1.18 265701 64 3315 262694 1.25 266009 65 3458 261404 1.31 264862 66 3196 256588 1.23 259784 67 3181 249891 1.26 253072 68 3316 252495 1.30 255811 69 3173 251837 1.24 255010 70 3072 246602 1.23 249674 71 3099 245602 1.25 248701 72 3089 245843 1.24 248932 73 3125 241839 1.28 244964 74 3207 239543 1.32 242750 75 3130 241175 1.28 244305 76 2923 234389 1.23 237312 77 3222 235090 1.35 238312 78 3028 232750 1.28 235778 79 3021 227370 1.31 230391 80 3048 227410 1.32 230458 81 2953 225215 1.29 228168 82 2874 221458 1.28 224332 83 3099 224477 1.36 227576 84 3120 224994 1.37 228114 85 3156 220412 1.41 223568 86 3117 222275 1.38 225392 87 2978 221715 1.33 224693 88 3236 216480 1.47 219716 89 2968 214495 1.36 217463 90 2958 215025 1.36 217983 91 3009 210519 1.41 213528 92 3094 212140 1.44 215234 93 3148 209363 1.48 212511 94 3050 204697 1.47 207747 95 3145 201798 1.53 204943 96 3051 201619 1.49 204670 97 2934 184142 1.57 187076 98 2598 168751 1.52 171349 99 1703 108826 1.54 110529 100 1995 110051 1.78 112046 101 4139 183469 2.21 187608 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 210707 389359 35.11 600066 2 107498 412590 20.67 520088 3 57033 478717 10.65 535750 4 47575 512345 8.50 559920 5 44062 592601 6.92 636663 6 35359 634908 5.28 670267 7 30269 789675 3.69 819944 8 18024 841468 2.10 859492 9 13711 784971 1.72 798682 10 13425 773646 1.71 787071 11 15323 777708 1.93 793031 12 12912 785651 1.62 798563 13 13996 800899 1.72 814895 14 14992 818101 1.80 833093 15 13068 837477 1.54 850545 16 12623 847304 1.47 859927 17 14116 851690 1.63 865806 18 12438 878148 1.40 890586 19 12410 893618 1.37 906028 20 14355 920936 1.53 935291 21 12387 920422 1.33 932809 22 13074 923877 1.40 936951 23 14532 927790 1.54 942322 24 12459 928996 1.32 941455 25 12959 931181 1.37 944140 26 14744 939669 1.54 954413 27 12636 939971 1.33 952607 28 12404 943064 1.30 955468 29 14370 940375 1.51 954745 30 12572 933905 1.33 946477 31 12752 921669 1.36 934421 32 13890 928394 1.47 942284 33 12247 927807 1.30 940054 34 13354 929441 1.42 942795 35 14596 919870 1.56 934466 36 12729 927771 1.35 940500 37 12852 919214 1.38 932066 38 14271 923642 1.52 937913 39 12291 917262 1.32 929553 40 12815 917094 1.38 929909 41 14022 919546 1.50 933568 42 12950 927921 1.38 940871 43 13208 917183 1.42 930391 44 13759 919127 1.47 932886 45 12599 910818 1.36 923417 46 12637 912209 1.37 924846 47 13896 906374 1.51 920270 48 12427 905301 1.35 917728 49 12606 894833 1.39 907439 50 13659 891322 1.51 904981 51 11962 883042 1.34 895004 52 12759 877639 1.43 890398 53 13642 871928 1.54 885570 54 12180 870245 1.38 882425 55 12649 867099 1.44 879748 56 13753 865397 1.56 879150 57 11866 875737 1.34 887603 58 12492 871414 1.41 883906 59 13909 875929 1.56 889838 60 11705 860691 1.34 872396 61 12709 858459 1.46 871168 62 13253 847719 1.54 860972 63 11746 841844 1.38 853590 64 12704 836349 1.50 849053 65 13338 830563 1.58 843901 66 11525 826348 1.38 837873 67 11922 820540 1.43 832462 68 12991 819176 1.56 832167 69 11129 813120 1.35 824249 70 11701 807823 1.43 819524 71 12584 802689 1.54 815273 72 11109 797775 1.37 808884 73 12248 786526 1.53 798774 74 12337 784017 1.55 796354 75 11098 779920 1.40 791018 76 11074 776336 1.41 787410 77 12567 769326 1.61 781893 78 10607 764206 1.37 774813 79 10959 756881 1.43 767840 80 12025 752193 1.57 764218 81 10817 743549 1.43 754366 82 11346 736012 1.52 747358 83 12294 734909 1.65 747203 84 10719 727588 1.45 738307 85 11273 714221 1.55 725494 86 11536 709433 1.60 720969 87 10607 706807 1.48 717414 88 11176 699652 1.57 710828 89 11473 692669 1.63 704142 90 9991 690662 1.43 700653 91 10557 682245 1.52 692802 92 10964 678685 1.59 689649 93 9686 671777 1.42 681463 94 10269 662630 1.53 672899 95 10949 654648 1.64 665597 96 9557 641902 1.47 651459 97 9599 623871 1.52 633470 98 9750 581554 1.65 591304 99 6092 399244 1.50 405336 100 6461 353842 1.79 360303 101 9990 588964 1.67 598954 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 124158 119052 51.05 243210 2 104403 98118 51.55 202521 3 113200 110516 50.60 223716 4 101160 121579 45.42 222739 5 45787 155656 22.73 201443 6 28374 85914 24.83 114288 7 24538 91906 21.07 116444 8 25844 83229 23.69 109073 9 22632 73826 23.46 96458 10 24829 80872 23.49 105701 11 26112 78400 24.98 104512 12 25056 75894 24.82 100950 13 25976 73217 26.19 99193 14 26787 74302 26.50 101089 15 26463 68695 27.81 95158 16 24618 66478 27.02 91096 17 29627 72244 29.08 101871 18 28784 69967 29.15 98751 19 27286 67079 28.92 94365 20 24816 64976 27.64 89792 21 26650 63674 29.50 90324 22 26470 64495 29.10 90965 23 25025 62218 28.68 87243 24 22958 58428 28.21 81386 25 25501 63156 28.76 88657 26 23732 59459 28.53 83191 27 24939 60537 29.18 85476 28 23036 57980 28.43 81016 29 24350 59880 28.91 84230 30 23154 55231 29.54 78385 31 22495 55868 28.71 78363 32 21871 52996 29.21 74867 33 24893 54486 31.36 79379 34 22924 56243 28.96 79167 35 28109 61532 31.36 89641 36 23262 53941 30.13 77203 37 24051 55295 30.31 79346 38 21099 52546 28.65 73645 39 22010 52330 29.61 74340 40 24507 52234 31.93 76741 41 21509 51018 29.66 72527 42 21363 51824 29.19 73187 43 20932 50957 29.12 71889 44 20198 49527 28.97 69725 45 25438 54934 31.65 80372 46 19409 45792 29.77 65201 47 19724 46708 29.69 66432 48 19878 46540 29.93 66418 49 19301 46372 29.39 65673 50 18348 44425 29.23 62773 51 18076 43000 29.60 61076 52 17900 43619 29.10 61519 53 18604 43469 29.97 62073 54 18603 43261 30.07 61864 55 18517 43318 29.95 61835 56 17115 41815 29.04 58930 57 17620 42103 29.50 59723 58 17999 41506 30.25 59505 59 16728 39295 29.86 56023 60 17462 40449 30.15 57911 61 15519 38458 28.75 53977 62 15729 38566 28.97 54295 63 17191 38591 30.82 55782 64 15870 37593 29.68 53463 65 15712 35913 30.43 51625 66 16582 37150 30.86 53732 67 15473 37543 29.19 53016 68 17098 38868 30.55 55966 69 14890 34660 30.05 49550 70 14419 34981 29.19 49400 71 14790 33706 30.50 48496 72 13841 33157 29.45 46998 73 14312 34038 29.60 48350 74 12926 31924 28.82 44850 75 12861 31743 28.83 44604 76 13481 31367 30.06 44848 77 12798 30978 29.24 43776 78 12731 31553 28.75 44284 79 12290 30659 28.62 42949 80 12121 30358 28.53 42479 81 12092 29705 28.93 41797 82 12305 29881 29.17 42186 83 12225 29056 29.61 41281 84 13630 31011 30.53 44641 85 11645 28575 28.95 40220 86 11641 28392 29.08 40033 87 11503 27346 29.61 38849 88 11452 27554 29.36 39006 89 11941 28084 29.83 40025 90 11856 27175 30.38 39031 91 10886 26887 28.82 37773 92 10848 26172 29.30 37020 93 10783 26056 29.27 36839 94 11159 26226 29.85 37385 95 10942 26041 29.59 36983 96 10580 25784 29.09 36364 97 11535 26799 30.09 38334 98 10469 23859 30.50 34328 99 9175 0 100.00 9175 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 31126 156181 16.62 187307 2 30572 157165 16.28 187737 3 28127 155263 15.34 183390 4 29533 165614 15.13 195147 5 3140 302983 1.03 306123 6 2638 375651 0.70 378289 7 1593 206556 0.77 208149 8 1566 219041 0.71 220607 9 1398 183579 0.76 184977 10 1440 175160 0.82 176600 11 1987 240647 0.82 242634 12 1594 187325 0.84 188919 13 1484 184955 0.80 186439 14 1474 177401 0.82 178875 15 1504 170174 0.88 171678 16 1319 158279 0.83 159598 17 1438 169917 0.84 171355 18 1542 151651 1.01 153193 19 1369 147304 0.92 148673 20 1322 146076 0.90 147398 21 1533 139643 1.09 141176 22 1409 152936 0.91 154345 23 1401 153004 0.91 154405 24 1146 135396 0.84 136542 25 1221 137276 0.88 138497 26 1357 144366 0.93 145723 27 1221 136787 0.88 138008 28 1125 129924 0.86 131049 29 1259 137959 0.90 139218 30 1202 134624 0.88 135826 31 1140 126416 0.89 127556 32 1143 129262 0.88 130405 33 1248 154629 0.80 155877 34 1112 126529 0.87 127641 35 1145 131900 0.86 133045 36 1095 132479 0.82 133574 37 1067 119623 0.88 120690 38 1159 127478 0.90 128637 39 1031 116618 0.88 117649 40 1065 117381 0.90 118446 41 1056 114198 0.92 115254 42 1007 109172 0.91 110179 43 968 110712 0.87 111680 44 1031 110459 0.92 111490 45 969 104554 0.92 105523 46 933 104720 0.88 105653 47 915 108173 0.84 109088 48 1002 103006 0.96 104008 49 949 106661 0.88 107610 50 952 102402 0.92 103354 51 851 97739 0.86 98590 52 903 96111 0.93 97014 53 1006 107835 0.92 108841 54 994 98822 1.00 99816 55 863 95556 0.90 96419 56 933 96839 0.95 97772 57 863 92145 0.93 93008 58 855 89587 0.95 90442 59 817 93495 0.87 94312 60 976 90105 1.07 91081 61 843 90498 0.92 91341 62 872 92151 0.94 93023 63 866 90526 0.95 91392 64 719 85208 0.84 85927 65 770 88075 0.87 88845 66 712 82472 0.86 83184 67 789 88628 0.88 89417 68 705 85128 0.82 85833 69 816 84548 0.96 85364 70 778 83996 0.92 84774 71 755 85572 0.87 86327 72 766 79552 0.95 80318 73 715 78360 0.90 79075 74 737 80923 0.90 81660 75 705 78067 0.89 78772 76 667 74944 0.88 75611 77 679 77706 0.87 78385 78 650 72781 0.89 73431 79 660 73677 0.89 74337 80 645 71632 0.89 72277 81 604 69612 0.86 70216 82 566 69001 0.81 69567 83 677 69620 0.96 70297 84 565 66675 0.84 67240 85 649 73827 0.87 74476 86 588 66671 0.87 67259 87 589 65800 0.89 66389 88 583 63206 0.91 63789 89 637 66026 0.96 66663 90 659 65106 1.00 65765 91 617 67526 0.91 68143 92 549 63719 0.85 64268 93 531 61250 0.86 61781 94 601 60840 0.98 61441 95 622 62597 0.98 63219 96 609 58977 1.02 59586 97 593 58347 1.01 58940 98 449 57635 0.77 58084 99 343 0 100.00 343 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 40147 208898 16.12 249045 2 32594 170367 16.06 202961 3 32874 173488 15.93 206362 4 31503 166307 15.93 197810 5 6019 338937 1.74 344956 6 5801 460298 1.24 466099 7 6665 632235 1.04 638900 8 6910 619493 1.10 626403 9 6987 582742 1.18 589729 10 6728 597687 1.11 604415 11 6722 589444 1.13 596166 12 6702 550925 1.20 557627 13 6556 569782 1.14 576338 14 6517 567563 1.14 574080 15 6693 584558 1.13 591251 16 6329 564234 1.11 570563 17 6460 558800 1.14 565260 18 6473 555838 1.15 562311 19 5885 513299 1.13 519184 20 6378 545151 1.16 551529 21 6162 518397 1.17 524559 22 6010 496141 1.20 502151 23 5761 490427 1.16 496188 24 5725 472230 1.20 477955 25 5812 470639 1.22 476451 26 5693 467134 1.20 472827 27 6029 502196 1.19 508225 28 5615 472397 1.17 478012 29 5550 460271 1.19 465821 30 5473 450355 1.20 455828 31 5106 442893 1.14 447999 32 5175 430834 1.19 436009 33 5290 426098 1.23 431388 34 5143 423536 1.20 428679 35 6063 436863 1.37 442926 36 5207 430696 1.19 435903 37 5202 430392 1.19 435594 38 5399 453716 1.18 459115 39 4986 408667 1.21 413653 40 5125 431771 1.17 436896 41 4983 403679 1.22 408662 42 4966 416322 1.18 421288 43 4798 394162 1.20 398960 44 4790 389984 1.21 394774 45 4994 392523 1.26 397517 46 4756 396803 1.18 401559 47 4704 385918 1.20 390622 48 4674 379002 1.22 383676 49 4448 387819 1.13 392267 50 4549 377587 1.19 382136 51 4391 369572 1.17 373963 52 4259 351386 1.20 355645 53 4146 350933 1.17 355079 54 3938 344183 1.13 348121 55 4308 356488 1.19 360796 56 4028 340870 1.17 344898 57 4021 354946 1.12 358967 58 3850 337799 1.13 341649 59 3851 324839 1.17 328690 60 3975 339321 1.16 343296 61 3760 322676 1.15 326436 62 3760 318196 1.17 321956 63 3777 320983 1.16 324760 64 3548 308245 1.14 311793 65 3576 314580 1.12 318156 66 3676 301988 1.20 305664 67 3379 303799 1.10 307178 68 3677 314410 1.16 318087 69 3570 302786 1.17 306356 70 3366 289573 1.15 292939 71 3473 288663 1.19 292136 72 3336 287605 1.15 290941 73 3284 284004 1.14 287288 74 3273 285596 1.13 288869 75 3164 282878 1.11 286042 76 3119 270810 1.14 273929 77 3207 269477 1.18 272684 78 3218 271551 1.17 274769 79 3084 276045 1.10 279129 80 3071 264442 1.15 267513 81 3218 263995 1.20 267213 82 3119 260351 1.18 263470 83 2978 258380 1.14 261358 84 3223 255039 1.25 258262 85 3008 251311 1.18 254319 86 2926 250729 1.15 253655 87 2940 248408 1.17 251348 88 2745 240660 1.13 243405 89 2879 240352 1.18 243231 90 2871 237972 1.19 240843 91 2715 237492 1.13 240207 92 2669 234807 1.12 237476 93 2683 232066 1.14 234749 94 2620 228676 1.13 231296 95 2619 224856 1.15 227475 96 2438 220047 1.10 222485 97 2445 220339 1.10 222784 98 2080 209673 0.98 211753 99 1512 0 100.00 1512