EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7210277 lines in total Total number of methylation call strings processed: 14420554 Final Cytosine Methylation Report ================================= Total number of C's analysed: 154371720 Total methylated C's in CpG context: 6619617 Total methylated C's in CHG context: 739999 Total methylated C's in CHH context: 1943298 Total C to T conversions in CpG context: 14863708 Total C to T conversions in CHG context: 32156644 Total C to T conversions in CHH context: 98048454 C methylated in CpG context: 30.8% C methylated in CHG context: 2.2% C methylated in CHH context: 1.9%