/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-151_S2_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-151_S2_L002_R2_001_val_2.fq.gz
Data processed at 23:49 on 2020-03-24
Alignment Stats
Sequence pairs analysed in total
24505793
Paired-end alignments with a unique best hit
9915442
Pairs without alignments under any condition
12555282
Pairs that did not map uniquely
2035069
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
303264962
Methylated C's in CpG context
12323211
Methylated C's in CHG context
1414630
Methylated C's in CHH context
3533701
Methylated C's in Unknown context
52135
Unmethylated C's in CpG context
31194293
Unmethylated C's in CHG context
65160946
Unmethylated C's in CHH context
189638181
Unmethylated C's in Unknown context
646387
Percentage methylation (CpG context)
28.3%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4881878
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5033563
original bottom strand
Deduplication
Alignments analysed
9915441
Unique alignments
7210277
Duplicates removed
2705164
Duplicated alignments were found at 1698251 different positions