CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 199751 321610 38.31 521361 2 185084 342858 35.06 527942 3 164157 292255 35.97 456412 4 162737 214516 43.14 377253 5 153970 181923 45.84 335893 6 155332 154484 50.14 309816 7 169040 146651 53.55 315691 8 78256 169348 31.61 247604 9 70813 154844 31.38 225657 10 71054 147271 32.55 218325 11 72697 149942 32.65 222639 12 69673 155100 31.00 224773 13 68647 159357 30.11 228004 14 64047 156239 29.07 220286 15 61985 158346 28.13 220331 16 57460 155870 26.93 213330 17 54439 150488 26.57 204927 18 56629 151150 27.25 207779 19 55279 154419 26.36 209698 20 56136 156052 26.46 212188 21 56792 158965 26.32 215757 22 55924 155965 26.39 211889 23 55474 154320 26.44 209794 24 54449 154373 26.07 208822 25 53066 152744 25.78 205810 26 53439 150697 26.18 204136 27 52967 156608 25.27 209575 28 55114 153337 26.44 208451 29 53388 157927 25.26 211315 30 53043 153644 25.66 206687 31 53464 150960 26.15 204424 32 52407 147109 26.27 199516 33 52709 149105 26.12 201814 34 53909 148183 26.68 202092 35 51858 146849 26.10 198707 36 51603 148680 25.77 200283 37 50357 145077 25.77 195434 38 50132 145845 25.58 195977 39 51899 148456 25.90 200355 40 51962 146074 26.24 198036 41 51377 145986 26.03 197363 42 52820 149174 26.15 201994 43 52186 147440 26.14 199626 44 51574 145409 26.18 196983 45 51928 144935 26.38 196863 46 52708 147274 26.36 199982 47 51991 144133 26.51 196124 48 51735 144494 26.36 196229 49 53148 144527 26.89 197675 50 51324 147179 25.86 198503 51 51441 145999 26.05 197440 52 51296 152713 25.14 204009 53 50364 143829 25.94 194193 54 49320 142021 25.78 191341 55 48939 137494 26.25 186433 56 48912 135998 26.45 184910 57 49051 137428 26.30 186479 58 49243 137548 26.36 186791 59 49396 137366 26.45 186762 60 47808 137648 25.78 185456 61 48833 134852 26.59 183685 62 47453 138466 25.52 185919 63 46734 135938 25.58 182672 64 47105 135418 25.81 182523 65 47261 133232 26.18 180493 66 48098 134414 26.35 182512 67 47047 132072 26.27 179119 68 46383 131297 26.10 177680 69 45539 130366 25.89 175905 70 45457 129661 25.96 175118 71 44679 128856 25.75 173535 72 44986 128169 25.98 173155 73 44281 126758 25.89 171039 74 43944 125019 26.01 168963 75 42459 124879 25.37 167338 76 42919 122900 25.88 165819 77 43364 122824 26.09 166188 78 42815 123130 25.80 165945 79 42500 121265 25.95 163765 80 41172 121166 25.36 162338 81 41456 120147 25.65 161603 82 40414 118675 25.40 159089 83 40740 119583 25.41 160323 84 41003 119401 25.56 160404 85 40564 119177 25.39 159741 86 39904 116543 25.51 156447 87 39442 115422 25.47 154864 88 39080 115525 25.28 154605 89 38463 113909 25.24 152372 90 38451 113506 25.30 151957 91 38604 111498 25.72 150102 92 37075 111254 25.00 148329 93 37346 111175 25.15 148521 94 37244 110081 25.28 147325 95 36713 108848 25.22 145561 96 36930 111678 24.85 148608 97 35390 106699 24.91 142089 98 33245 100389 24.88 133634 99 25912 78791 24.75 104703 100 34494 101027 25.45 135521 101 31244 99652 23.87 130896 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 281486 307555 47.79 589041 2 165951 269825 38.08 435776 3 62937 264511 19.22 327448 4 27859 278647 9.09 306506 5 16611 259963 6.01 276574 6 13418 250274 5.09 263692 7 10051 320965 3.04 331016 8 4025 347094 1.15 351119 9 3379 321551 1.04 324930 10 3404 305582 1.10 308986 11 3360 308648 1.08 312008 12 3351 307197 1.08 310548 13 2882 294785 0.97 297667 14 2609 293825 0.88 296434 15 2531 300643 0.83 303174 16 2362 299301 0.78 301663 17 2247 297431 0.75 299678 18 2294 296403 0.77 298697 19 2159 296472 0.72 298631 20 2201 309273 0.71 311474 21 2241 314671 0.71 316912 22 2238 311210 0.71 313448 23 2255 315544 0.71 317799 24 2190 316371 0.69 318561 25 2171 307153 0.70 309324 26 2367 309504 0.76 311871 27 2250 311451 0.72 313701 28 2187 310366 0.70 312553 29 2294 313263 0.73 315557 30 2290 316914 0.72 319204 31 2282 310300 0.73 312582 32 2213 310923 0.71 313136 33 2313 311068 0.74 313381 34 2189 307142 0.71 309331 35 2313 309136 0.74 311449 36 2290 308303 0.74 310593 37 2256 302616 0.74 304872 38 2410 308168 0.78 310578 39 2384 304394 0.78 306778 40 2284 302040 0.75 304324 41 2311 302487 0.76 304798 42 2324 302902 0.76 305226 43 2338 300421 0.77 302759 44 2414 304435 0.79 306849 45 2300 303660 0.75 305960 46 2458 299822 0.81 302280 47 2446 300227 0.81 302673 48 2427 304173 0.79 306600 49 2448 298076 0.81 300524 50 2522 298714 0.84 301236 51 2501 300531 0.83 303032 52 2597 300578 0.86 303175 53 2463 298482 0.82 300945 54 2519 299302 0.83 301821 55 2590 295031 0.87 297621 56 2632 297976 0.88 300608 57 2543 296499 0.85 299042 58 2930 293052 0.99 295982 59 2696 294756 0.91 297452 60 2621 295406 0.88 298027 61 2694 294604 0.91 297298 62 2695 295865 0.90 298560 63 2725 291330 0.93 294055 64 2613 292216 0.89 294829 65 2862 290279 0.98 293141 66 2757 286267 0.95 289024 67 2692 278290 0.96 280982 68 2683 280412 0.95 283095 69 2626 279986 0.93 282612 70 2684 276790 0.96 279474 71 2681 275572 0.96 278253 72 2585 274130 0.93 276715 73 2640 271195 0.96 273835 74 2627 269254 0.97 271881 75 2645 270482 0.97 273127 76 2560 263461 0.96 266021 77 2616 265205 0.98 267821 78 2477 262474 0.93 264951 79 2520 257556 0.97 260076 80 2551 256315 0.99 258866 81 2550 254288 0.99 256838 82 2499 251479 0.98 253978 83 2558 255527 0.99 258085 84 2579 254739 1.00 257318 85 2592 250685 1.02 253277 86 2499 253516 0.98 256015 87 2528 251973 0.99 254501 88 2559 247772 1.02 250331 89 2647 245902 1.06 248549 90 2686 244907 1.08 247593 91 2568 241796 1.05 244364 92 2735 242780 1.11 245515 93 2785 240703 1.14 243488 94 2663 236459 1.11 239122 95 2684 235643 1.13 238327 96 2796 232988 1.19 235784 97 2623 213867 1.21 216490 98 2298 195969 1.16 198267 99 1637 127500 1.27 129137 100 1677 129707 1.28 131384 101 3509 211188 1.63 214697 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 230253 332637 40.91 562890 2 102209 350985 22.55 453194 3 44704 468313 8.71 513017 4 36951 513250 6.72 550201 5 31894 620355 4.89 652249 6 24940 686836 3.50 711776 7 23375 886624 2.57 909999 8 12530 956955 1.29 969485 9 9708 874131 1.10 883839 10 9208 855454 1.06 864662 11 9908 857735 1.14 867643 12 8908 877051 1.01 885959 13 9423 896567 1.04 905990 14 9680 918658 1.04 928338 15 8706 942436 0.92 951142 16 8897 961426 0.92 970323 17 9506 962763 0.98 972269 18 8674 999171 0.86 1007845 19 8634 1020838 0.84 1029472 20 9630 1051276 0.91 1060906 21 8613 1055407 0.81 1064020 22 9039 1055049 0.85 1064088 23 9653 1057840 0.90 1067493 24 8818 1059405 0.83 1068223 25 9029 1063191 0.84 1072220 26 9602 1069996 0.89 1079598 27 8835 1074215 0.82 1083050 28 8949 1074680 0.83 1083629 29 9679 1070748 0.90 1080427 30 8773 1055456 0.82 1064229 31 8810 1041570 0.84 1050380 32 9420 1053176 0.89 1062596 33 8723 1043844 0.83 1052567 34 9092 1053537 0.86 1062629 35 9570 1042135 0.91 1051705 36 9032 1052600 0.85 1061632 37 8710 1043509 0.83 1052219 38 9407 1044388 0.89 1053795 39 8557 1039464 0.82 1048021 40 8871 1041449 0.84 1050320 41 9485 1045567 0.90 1055052 42 9202 1053859 0.87 1063061 43 9152 1037966 0.87 1047118 44 9355 1042838 0.89 1052193 45 8890 1033939 0.85 1042829 46 8946 1037357 0.86 1046303 47 9384 1030086 0.90 1039470 48 8837 1028329 0.85 1037166 49 8959 1014407 0.88 1023366 50 9329 1010593 0.91 1019922 51 8508 1000973 0.84 1009481 52 8827 997173 0.88 1006000 53 9176 991198 0.92 1000374 54 8599 989194 0.86 997793 55 8968 992018 0.90 1000986 56 9346 989132 0.94 998478 57 8614 1001621 0.85 1010235 58 9914 987595 0.99 997509 59 9600 1003561 0.95 1013161 60 8544 986456 0.86 995000 61 8686 982107 0.88 990793 62 9271 974735 0.94 984006 63 8618 964848 0.89 973466 64 9039 960902 0.93 969941 65 9217 959507 0.95 968724 66 8483 953723 0.88 962206 67 8693 950380 0.91 959073 68 9114 945450 0.95 954564 69 8271 938702 0.87 946973 70 8474 938199 0.90 946673 71 9095 930948 0.97 940043 72 8268 927653 0.88 935921 73 8760 916115 0.95 924875 74 8811 916789 0.95 925600 75 8321 911982 0.90 920303 76 8176 906951 0.89 915127 77 8699 899672 0.96 908371 78 7787 894150 0.86 901937 79 8088 891175 0.90 899263 80 8514 884381 0.95 892895 81 8112 874475 0.92 882587 82 8073 867338 0.92 875411 83 8452 869436 0.96 877888 84 7707 859459 0.89 867166 85 7768 850613 0.90 858381 86 8091 842630 0.95 850721 87 7854 840970 0.93 848824 88 7672 837193 0.91 844865 89 8213 829432 0.98 837645 90 7436 824432 0.89 831868 91 7831 816231 0.95 824062 92 7872 816344 0.96 824216 93 7475 807571 0.92 815046 94 7474 797557 0.93 805031 95 7878 790466 0.99 798344 96 7350 775493 0.94 782843 97 7156 757010 0.94 764166 98 7120 704095 1.00 711215 99 4797 484048 0.98 488845 100 4994 432544 1.14 437538 101 7578 710730 1.05 718308 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 114154 142668 44.45 256822 2 100032 127342 43.99 227374 3 110577 143033 43.60 253610 4 103573 160273 39.26 263846 5 45193 199938 18.44 245131 6 26491 107215 19.81 133706 7 24222 115958 17.28 140180 8 25199 107258 19.02 132457 9 22805 95986 19.20 118791 10 25431 105709 19.39 131140 11 26995 101998 20.93 128993 12 26645 98856 21.23 125501 13 26814 96866 21.68 123680 14 28508 96778 22.75 125286 15 27370 90772 23.17 118142 16 26447 88103 23.09 114550 17 31298 97049 24.39 128347 18 30842 92136 25.08 122978 19 29092 88374 24.77 117466 20 27680 86632 24.21 114312 21 28894 84735 25.43 113629 22 28506 86292 24.83 114798 23 27125 83586 24.50 110711 24 25739 78884 24.60 104623 25 28341 85010 25.00 113351 26 26143 81342 24.32 107485 27 27813 81392 25.47 109205 28 26630 78895 25.24 105525 29 27305 81164 25.17 108469 30 26174 76382 25.52 102556 31 24753 76357 24.48 101110 32 24286 73245 24.90 97531 33 26422 73923 26.33 100345 34 25499 75809 25.17 101308 35 30743 80699 27.59 111442 36 26597 73427 26.59 100024 37 26174 75349 25.78 101523 38 23831 72523 24.73 96354 39 25099 72086 25.83 97185 40 26362 72734 26.60 99096 41 23824 69518 25.52 93342 42 24188 70509 25.54 94697 43 24072 70612 25.42 94684 44 22962 68618 25.07 91580 45 27485 72726 27.43 100211 46 22456 64313 25.88 86769 47 22741 64967 25.93 87708 48 22641 64348 26.03 86989 49 21835 64567 25.27 86402 50 20829 62084 25.12 82913 51 21011 60956 25.63 81967 52 21237 62247 25.44 83484 53 21804 60045 26.64 81849 54 21089 60687 25.79 81776 55 21005 60830 25.67 81835 56 20200 58487 25.67 78687 57 20588 58529 26.02 79117 58 20374 57510 26.16 77884 59 19842 55887 26.20 75729 60 20347 56168 26.59 76515 61 18160 54393 25.03 72553 62 18048 54645 24.83 72693 63 19771 54378 26.66 74149 64 18406 53538 25.58 71944 65 17754 50955 25.84 68709 66 18875 51634 26.77 70509 67 17617 52434 25.15 70051 68 18864 53058 26.23 71922 69 17170 49680 25.68 66850 70 16850 49957 25.22 66807 71 17489 47852 26.77 65341 72 16596 47939 25.72 64535 73 16879 48388 25.86 65267 74 15357 46045 25.01 61402 75 15447 45293 25.43 60740 76 15822 44985 26.02 60807 77 15665 45140 25.76 60805 78 15504 45325 25.49 60829 79 14932 44753 25.02 59685 80 14452 44011 24.72 58463 81 14850 43068 25.64 57918 82 14743 42802 25.62 57545 83 14552 41916 25.77 56468 84 15494 44126 25.99 59620 85 14182 41550 25.45 55732 86 13976 41181 25.34 55157 87 13728 39688 25.70 53416 88 13674 39619 25.66 53293 89 14039 40357 25.81 54396 90 14053 39648 26.17 53701 91 13386 39142 25.48 52528 92 13084 37886 25.67 50970 93 13366 37980 26.03 51346 94 13299 37822 26.01 51121 95 13000 37705 25.64 50705 96 12696 37355 25.37 50051 97 13769 37922 26.64 51691 98 12259 34112 26.44 46371 99 10840 0 100.00 10840 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35869 191330 15.79 227199 2 36910 192922 16.06 229832 3 34857 196522 15.06 231379 4 37587 204243 15.54 241830 5 2761 373572 0.73 376333 6 2194 450761 0.48 452955 7 1280 246373 0.52 247653 8 1270 261231 0.48 262501 9 1158 224610 0.51 225768 10 1134 214579 0.53 215713 11 1551 273016 0.56 274567 12 1227 226720 0.54 227947 13 1311 224845 0.58 226156 14 1272 218832 0.58 220104 15 1245 206275 0.60 207520 16 1135 194988 0.58 196123 17 1360 208277 0.65 209637 18 1259 187012 0.67 188271 19 1209 183063 0.66 184272 20 1129 181416 0.62 182545 21 1234 176301 0.70 177535 22 1172 187504 0.62 188676 23 1199 187582 0.64 188781 24 1011 170991 0.59 172002 25 1086 174265 0.62 175351 26 1183 180436 0.65 181619 27 1131 169650 0.66 170781 28 1033 161186 0.64 162219 29 1105 170925 0.64 172030 30 1127 169618 0.66 170745 31 1024 161356 0.63 162380 32 1009 163899 0.61 164908 33 1106 186966 0.59 188072 34 1041 160416 0.64 161457 35 1046 165032 0.63 166078 36 995 165579 0.60 166574 37 965 153398 0.63 154363 38 1013 156514 0.64 157527 39 1001 149666 0.66 150667 40 950 150429 0.63 151379 41 940 145099 0.64 146039 42 946 139006 0.68 139952 43 870 140701 0.61 141571 44 859 142042 0.60 142901 45 825 134218 0.61 135043 46 839 135512 0.62 136351 47 951 139266 0.68 140217 48 933 133349 0.69 134282 49 924 135303 0.68 136227 50 865 132673 0.65 133538 51 766 126151 0.60 126917 52 802 124701 0.64 125503 53 849 138005 0.61 138854 54 851 128066 0.66 128917 55 815 124004 0.65 124819 56 830 126005 0.65 126835 57 787 119664 0.65 120451 58 701 117673 0.59 118374 59 826 122093 0.67 122919 60 798 118006 0.67 118804 61 794 117587 0.67 118381 62 814 117787 0.69 118601 63 765 116878 0.65 117643 64 708 112300 0.63 113008 65 705 113856 0.62 114561 66 715 108941 0.65 109656 67 735 114446 0.64 115181 68 701 111194 0.63 111895 69 692 110238 0.62 110930 70 697 108887 0.64 109584 71 675 110761 0.61 111436 72 656 104559 0.62 105215 73 653 103091 0.63 103744 74 648 106461 0.60 107109 75 643 102779 0.62 103422 76 600 98689 0.60 99289 77 633 101697 0.62 102330 78 600 97236 0.61 97836 79 645 96953 0.66 97598 80 566 94720 0.59 95286 81 564 91839 0.61 92403 82 614 91202 0.67 91816 83 593 91503 0.64 92096 84 608 89458 0.68 90066 85 591 94942 0.62 95533 86 536 88194 0.60 88730 87 547 88137 0.62 88684 88 538 85111 0.63 85649 89 572 87901 0.65 88473 90 606 86435 0.70 87041 91 565 87461 0.64 88026 92 531 85020 0.62 85551 93 540 81416 0.66 81956 94 501 80777 0.62 81278 95 548 82627 0.66 83175 96 554 78838 0.70 79392 97 517 78295 0.66 78812 98 408 75962 0.53 76370 99 317 0 100.00 317 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47757 263223 15.36 310980 2 38209 215813 15.04 254022 3 39505 224286 14.98 263791 4 39115 218701 15.17 257816 5 4269 422236 1.00 426505 6 3906 589007 0.66 592913 7 4832 794063 0.60 798895 8 5127 784994 0.65 790121 9 5003 739940 0.67 744943 10 5057 760693 0.66 765750 11 5029 744206 0.67 749235 12 5010 697033 0.71 702043 13 5019 717514 0.69 722533 14 5015 722675 0.69 727690 15 5082 731149 0.69 736231 16 4780 699652 0.68 704432 17 5032 696873 0.72 701905 18 5074 694181 0.73 699255 19 4552 654283 0.69 658835 20 4911 679364 0.72 684275 21 4687 651575 0.71 656262 22 4540 634986 0.71 639526 23 4361 623177 0.69 627538 24 4279 601880 0.71 606159 25 4550 601098 0.75 605648 26 4395 599286 0.73 603681 27 4721 632491 0.74 637212 28 4304 607458 0.70 611762 29 4183 592129 0.70 596312 30 4362 578442 0.75 582804 31 4130 576448 0.71 580578 32 3983 565167 0.70 569150 33 4069 556513 0.73 560582 34 4077 550443 0.74 554520 35 4629 567001 0.81 571630 36 4139 555905 0.74 560044 37 4151 554514 0.74 558665 38 4292 576519 0.74 580811 39 4217 534707 0.78 538924 40 4014 554710 0.72 558724 41 3947 529991 0.74 533938 42 3844 536987 0.71 540831 43 3924 517362 0.75 521286 44 3789 514420 0.73 518209 45 3994 516227 0.77 520221 46 3831 521154 0.73 524985 47 3805 511575 0.74 515380 48 3839 501084 0.76 504923 49 3673 507119 0.72 510792 50 3554 500853 0.70 504407 51 3541 491152 0.72 494693 52 3442 469485 0.73 472927 53 3520 466127 0.75 469647 54 3319 458995 0.72 462314 55 3453 467837 0.73 471290 56 3363 454944 0.73 458307 57 3327 467208 0.71 470535 58 3340 452028 0.73 455368 59 3112 440162 0.70 443274 60 3296 452343 0.72 455639 61 3188 435341 0.73 438529 62 3112 433171 0.71 436283 63 3101 429816 0.72 432917 64 2976 416983 0.71 419959 65 2934 420376 0.69 423310 66 3036 406717 0.74 409753 67 2832 406555 0.69 409387 68 3038 417592 0.72 420630 69 2945 406308 0.72 409253 70 2789 394041 0.70 396830 71 2816 392266 0.71 395082 72 2822 388441 0.72 391263 73 2732 386906 0.70 389638 74 2735 388690 0.70 391425 75 2768 383775 0.72 386543 76 2692 371146 0.72 373838 77 2687 367397 0.73 370084 78 2734 370459 0.73 373193 79 2640 374204 0.70 376844 80 2592 360419 0.71 363011 81 2615 358198 0.72 360813 82 2461 355736 0.69 358197 83 2660 352240 0.75 354900 84 2585 347486 0.74 350071 85 2497 344908 0.72 347405 86 2484 344186 0.72 346670 87 2465 338764 0.72 341229 88 2402 330470 0.72 332872 89 2482 329101 0.75 331583 90 2407 326945 0.73 329352 91 2340 326352 0.71 328692 92 2207 322582 0.68 324789 93 2365 318355 0.74 320720 94 2266 313555 0.72 315821 95 2226 309357 0.71 311583 96 2271 303049 0.74 305320 97 2140 302643 0.70 304783 98 1765 285878 0.61 287643 99 1310 0 100.00 1310