/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-145_S38_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-145_S38_L005_R2_001_val_2.fq.gz
Data processed at 23:49 on 2020-03-24
Alignment Stats
Sequence pairs analysed in total
25314513
Paired-end alignments with a unique best hit
11191276
Pairs without alignments under any condition
11992514
Pairs that did not map uniquely
2130723
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
346932784
Methylated C's in CpG context
12322055
Methylated C's in CHG context
1693840
Methylated C's in CHH context
2773795
Methylated C's in Unknown context
48529
Unmethylated C's in CpG context
36498527
Unmethylated C's in CHG context
70595301
Unmethylated C's in CHH context
223049266
Unmethylated C's in Unknown context
722709
Percentage methylation (CpG context)
25.2%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5539947
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5651327
original bottom strand
Deduplication
Alignments analysed
11191274
Unique alignments
9355933
Duplicates removed
1835341
Duplicated alignments were found at 997702 different positions
