CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 185682 346214 34.91 531896 2 174303 372703 31.86 547006 3 161244 325831 33.10 487075 4 165736 250574 39.81 416310 5 158372 214632 42.46 373004 6 155122 179703 46.33 334825 7 168726 174268 49.19 342994 8 80232 204045 28.22 284277 9 72547 186727 27.98 259274 10 74133 177584 29.45 251717 11 77357 182327 29.79 259684 12 75153 186292 28.75 261445 13 72873 188414 27.89 261287 14 68565 187413 26.79 255978 15 65997 188527 25.93 254524 16 61240 186038 24.77 247278 17 57044 181151 23.95 238195 18 58285 183987 24.06 242272 19 57800 185567 23.75 243367 20 58419 188249 23.68 246668 21 59079 190659 23.66 249738 22 57743 188278 23.47 246021 23 57002 186373 23.42 243375 24 56546 186027 23.31 242573 25 54976 184493 22.96 239469 26 54902 181752 23.20 236654 27 54949 187789 22.64 242738 28 56403 185736 23.29 242139 29 55036 186968 22.74 242004 30 53985 184440 22.64 238425 31 54988 181677 23.23 236665 32 53849 178564 23.17 232413 33 54437 179950 23.23 234387 34 55926 179396 23.77 235322 35 54358 177780 23.42 232138 36 53453 179510 22.94 232963 37 51783 174800 22.85 226583 38 51801 174567 22.88 226368 39 53486 179329 22.97 232815 40 52960 175346 23.20 228306 41 52704 177721 22.87 230425 42 53683 180699 22.90 234382 43 53438 178248 23.06 231686 44 53271 175463 23.29 228734 45 53222 175485 23.27 228707 46 54309 177917 23.39 232226 47 52974 174493 23.29 227467 48 52599 174127 23.20 226726 49 53886 174462 23.60 228348 50 52432 177094 22.84 229526 51 52811 175134 23.17 227945 52 53304 180606 22.79 233910 53 51994 173051 23.10 225045 54 51225 169932 23.16 221157 55 50646 166930 23.28 217576 56 50679 164684 23.53 215363 57 50771 167015 23.31 217786 58 51185 166456 23.52 217641 59 51422 165538 23.70 216960 60 49578 166634 22.93 216212 61 50848 164223 23.64 215071 62 49591 166436 22.96 216027 63 48848 163189 23.04 212037 64 48633 163557 22.92 212190 65 49246 162292 23.28 211538 66 49873 162984 23.43 212857 67 49162 160178 23.48 209340 68 48497 159621 23.30 208118 69 47476 158439 23.06 205915 70 47338 157473 23.11 204811 71 46361 156736 22.83 203097 72 46274 155709 22.91 201983 73 45794 153248 23.01 199042 74 46318 152321 23.32 198639 75 44426 151473 22.68 195899 76 44721 149519 23.02 194240 77 45319 149773 23.23 195092 78 45260 150358 23.14 195618 79 44105 148385 22.91 192490 80 43711 147481 22.86 191192 81 42918 146771 22.63 189689 82 42121 145442 22.46 187563 83 42877 146699 22.62 189576 84 42512 146234 22.52 188746 85 41970 144578 22.50 186548 86 41699 142283 22.66 183982 87 40579 141283 22.31 181862 88 40779 141543 22.37 182322 89 39991 139939 22.23 179930 90 39971 139462 22.28 179433 91 39562 138322 22.24 177884 92 39101 136603 22.25 175704 93 38956 137066 22.13 176022 94 39060 136288 22.28 175348 95 38296 133870 22.24 172166 96 38457 136163 22.02 174620 97 37575 129968 22.43 167543 98 35195 122910 22.26 158105 99 27607 96926 22.17 124533 100 35832 123436 22.50 159268 101 32644 122164 21.09 154808 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 300300 342884 46.69 643184 2 175935 306764 36.45 482699 3 64806 303910 17.58 368716 4 28044 317775 8.11 345819 5 16277 292359 5.27 308636 6 13087 278133 4.49 291220 7 10882 359819 2.94 370701 8 4469 389298 1.13 393767 9 3881 362376 1.06 366257 10 3853 342520 1.11 346373 11 4048 345517 1.16 349565 12 3777 342163 1.09 345940 13 3278 330363 0.98 333641 14 3062 328725 0.92 331787 15 2912 336946 0.86 339858 16 2673 336288 0.79 338961 17 2510 332690 0.75 335200 18 2391 330052 0.72 332443 19 2313 330715 0.69 333028 20 2469 346522 0.71 348991 21 2512 351505 0.71 354017 22 2428 348502 0.69 350930 23 2428 353268 0.68 355696 24 2421 352760 0.68 355181 25 2307 344538 0.67 346845 26 2580 346819 0.74 349399 27 2448 349789 0.69 352237 28 2404 348769 0.68 351173 29 2525 351026 0.71 353551 30 2444 356172 0.68 358616 31 2465 347452 0.70 349917 32 2424 349743 0.69 352167 33 2588 351744 0.73 354332 34 2505 346601 0.72 349106 35 2616 346721 0.75 349337 36 2594 346010 0.74 348604 37 2616 339533 0.76 342149 38 2558 344509 0.74 347067 39 2527 341155 0.74 343682 40 2541 340049 0.74 342590 41 2558 339371 0.75 341929 42 2620 339430 0.77 342050 43 2569 336887 0.76 339456 44 2680 341540 0.78 344220 45 2708 340087 0.79 342795 46 2591 336693 0.76 339284 47 2671 335939 0.79 338610 48 2736 340941 0.80 343677 49 2703 333801 0.80 336504 50 2772 334644 0.82 337416 51 2727 337176 0.80 339903 52 2799 336433 0.83 339232 53 2827 334796 0.84 337623 54 2860 336167 0.84 339027 55 2756 331689 0.82 334445 56 2752 334825 0.82 337577 57 2723 332995 0.81 335718 58 3123 329124 0.94 332247 59 2868 331053 0.86 333921 60 2847 330558 0.85 333405 61 2887 328363 0.87 331250 62 2965 330005 0.89 332970 63 2899 325934 0.88 328833 64 2910 325344 0.89 328254 65 3037 325350 0.92 328387 66 2978 319390 0.92 322368 67 2941 312819 0.93 315760 68 3002 315840 0.94 318842 69 3036 316557 0.95 319593 70 2879 312652 0.91 315531 71 2947 310066 0.94 313013 72 2879 308538 0.92 311417 73 2952 305750 0.96 308702 74 2918 302426 0.96 305344 75 2950 305160 0.96 308110 76 2727 298142 0.91 300869 77 2947 300201 0.97 303148 78 2774 294327 0.93 297101 79 2799 291026 0.95 293825 80 2819 289393 0.96 292212 81 2857 287037 0.99 289894 82 2785 283577 0.97 286362 83 2767 288484 0.95 291251 84 2833 285943 0.98 288776 85 2797 283730 0.98 286527 86 2779 284692 0.97 287471 87 2841 283338 0.99 286179 88 2840 280214 1.00 283054 89 2848 277609 1.02 280457 90 2824 277994 1.01 280818 91 2844 274516 1.03 277360 92 3057 276279 1.09 279336 93 3100 273477 1.12 276577 94 3058 268490 1.13 271548 95 3041 267192 1.13 270233 96 3129 264344 1.17 267473 97 2877 242379 1.17 245256 98 2584 223556 1.14 226140 99 1720 146161 1.16 147881 100 1886 147999 1.26 149885 101 3934 240653 1.61 244587 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 274872 383602 41.74 658474 2 121790 416156 22.64 537946 3 50963 531574 8.75 582537 4 39672 577245 6.43 616917 5 34008 697405 4.65 731413 6 27181 763461 3.44 790642 7 25044 983563 2.48 1008607 8 13140 1062496 1.22 1075636 9 10496 962439 1.08 972935 10 10247 935133 1.08 945380 11 10665 938738 1.12 949403 12 9640 955042 1.00 964682 13 10153 975708 1.03 985861 14 10598 1001738 1.05 1012336 15 9509 1027736 0.92 1037245 16 9445 1051936 0.89 1061381 17 9873 1062556 0.92 1072429 18 9320 1102746 0.84 1112066 19 9380 1128512 0.82 1137892 20 10208 1165276 0.87 1175484 21 9388 1167248 0.80 1176636 22 9592 1172140 0.81 1181732 23 10228 1176739 0.86 1186967 24 9445 1178086 0.80 1187531 25 9453 1183776 0.79 1193229 26 10413 1193703 0.86 1204116 27 9506 1197045 0.79 1206551 28 9535 1198434 0.79 1207969 29 10219 1192879 0.85 1203098 30 9434 1181555 0.79 1190989 31 9587 1164984 0.82 1174571 32 9947 1171668 0.84 1181615 33 9397 1166922 0.80 1176319 34 9863 1174822 0.83 1184685 35 10110 1161232 0.86 1171342 36 9518 1172835 0.81 1182353 37 9291 1164231 0.79 1173522 38 10141 1165652 0.86 1175793 39 9421 1157049 0.81 1166470 40 9543 1159589 0.82 1169132 41 10247 1164885 0.87 1175132 42 9750 1170874 0.83 1180624 43 9874 1155013 0.85 1164887 44 10186 1162193 0.87 1172379 45 9708 1151898 0.84 1161606 46 9468 1155148 0.81 1164616 47 10180 1147900 0.88 1158080 48 9537 1148389 0.82 1157926 49 9481 1134666 0.83 1144147 50 9884 1131205 0.87 1141089 51 9310 1123578 0.82 1132888 52 9606 1115557 0.85 1125163 53 10055 1108021 0.90 1118076 54 9377 1110775 0.84 1120152 55 9539 1105601 0.86 1115140 56 9944 1104738 0.89 1114682 57 9299 1118748 0.82 1128047 58 10872 1107238 0.97 1118110 59 10248 1116859 0.91 1127107 60 9290 1103096 0.84 1112386 61 9580 1096898 0.87 1106478 62 10024 1090221 0.91 1100245 63 9110 1082319 0.83 1091429 64 9740 1077522 0.90 1087262 65 9836 1076168 0.91 1086004 66 9134 1071535 0.85 1080669 67 9394 1067964 0.87 1077358 68 9830 1064687 0.91 1074517 69 8997 1059945 0.84 1068942 70 9380 1052215 0.88 1061595 71 9620 1048415 0.91 1058035 72 9066 1045955 0.86 1055021 73 9408 1033469 0.90 1042877 74 9469 1033170 0.91 1042639 75 9026 1028142 0.87 1037168 76 9051 1026817 0.87 1035868 77 9544 1018600 0.93 1028144 78 8607 1012147 0.84 1020754 79 8763 1008602 0.86 1017365 80 9189 1001195 0.91 1010384 81 8526 991092 0.85 999618 82 8863 983061 0.89 991924 83 9199 985650 0.92 994849 84 8744 974531 0.89 983275 85 8476 965237 0.87 973713 86 8903 956202 0.92 965105 87 8350 953644 0.87 961994 88 8376 947854 0.88 956230 89 8867 939059 0.94 947926 90 8281 937639 0.88 945920 91 8308 928268 0.89 936576 92 8700 927054 0.93 935754 93 8204 916948 0.89 925152 94 8233 910337 0.90 918570 95 8649 900270 0.95 908919 96 8086 882218 0.91 890304 97 7855 860610 0.90 868465 98 7894 801408 0.98 809302 99 5097 553510 0.91 558607 100 5530 494699 1.11 500229 101 8022 809830 0.98 817852 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 121987 175577 41.00 297564 2 107126 156972 40.56 264098 3 117724 176737 39.98 294461 4 113978 200713 36.22 314691 5 47877 252502 15.94 300379 6 27639 135252 16.97 162891 7 25009 141417 15.03 166426 8 26734 132983 16.74 159717 9 23764 118654 16.69 142418 10 26434 130299 16.87 156733 11 28248 125882 18.33 154130 12 28213 121001 18.91 149214 13 28291 120251 19.05 148542 14 30215 121453 19.92 151668 15 29306 112941 20.60 142247 16 28131 109442 20.45 137573 17 32875 119107 21.63 151982 18 32506 116198 21.86 148704 19 31061 111409 21.80 142470 20 29636 108199 21.50 137835 21 30898 106985 22.41 137883 22 30147 108276 21.78 138423 23 28350 104592 21.33 132942 24 27640 99863 21.68 127503 25 30216 105401 22.28 135617 26 27702 100454 21.62 128156 27 29455 101220 22.54 130675 28 27886 98182 22.12 126068 29 28474 100978 22.00 129452 30 28044 95725 22.66 123769 31 26605 95622 21.77 122227 32 25720 90802 22.07 116522 33 28488 92628 23.52 121116 34 27244 95592 22.18 122836 35 31551 102501 23.54 134052 36 27972 92468 23.22 120440 37 27956 94036 22.92 121992 38 25431 90454 21.95 115885 39 26604 89176 22.98 115780 40 27900 90238 23.62 118138 41 25533 87201 22.65 112734 42 25823 89060 22.48 114883 43 25765 88305 22.59 114070 44 24497 85865 22.20 110362 45 28616 91141 23.90 119757 46 24072 80637 22.99 104709 47 24325 80988 23.10 105313 48 24113 80847 22.97 104960 49 23563 80671 22.61 104234 50 22420 77812 22.37 100232 51 22752 76262 22.98 99014 52 22549 77839 22.46 100388 53 22925 75358 23.33 98283 54 22329 75915 22.73 98244 55 22755 76371 22.96 99126 56 21030 73994 22.13 95024 57 22025 74339 22.86 96364 58 21598 73282 22.76 94880 59 21098 69477 23.29 90575 60 21577 71250 23.24 92827 61 19703 67964 22.47 87667 62 19571 68660 22.18 88231 63 20739 68206 23.32 88945 64 19774 66629 22.89 86403 65 18959 63397 23.02 82356 66 19904 65425 23.33 85329 67 18934 66373 22.20 85307 68 19702 67840 22.51 87542 69 18252 61805 22.80 80057 70 17789 62126 22.26 79915 71 18324 60170 23.34 78494 72 17630 59271 22.93 76901 73 17615 61156 22.36 78771 74 16379 58135 21.98 74514 75 16577 57352 22.42 73929 76 16644 56509 22.75 73153 77 16510 56374 22.65 72884 78 16470 56531 22.56 73001 79 15929 56098 22.12 72027 80 15456 54712 22.03 70168 81 15422 53842 22.27 69264 82 15568 53871 22.42 69439 83 15481 52195 22.88 67676 84 16230 55821 22.53 72051 85 15095 52458 22.35 67553 86 14594 51775 21.99 66369 87 14599 49927 22.62 64526 88 14617 50214 22.55 64831 89 15186 50444 23.14 65630 90 14939 50312 22.89 65251 91 14369 48918 22.70 63287 92 13901 47928 22.48 61829 93 14099 47579 22.86 61678 94 14105 47420 22.93 61525 95 14000 46768 23.04 60768 96 14082 47288 22.95 61370 97 14434 48360 22.99 62794 98 13066 42839 23.37 55905 99 11366 0 100.00 11366 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 40253 217586 15.61 257839 2 42270 224642 15.84 266912 3 39845 227420 14.91 267265 4 44337 237126 15.75 281463 5 3160 435178 0.72 438338 6 2433 520529 0.47 522962 7 1459 283619 0.51 285078 8 1501 297939 0.50 299440 9 1283 256372 0.50 257655 10 1368 244346 0.56 245714 11 1710 308029 0.55 309739 12 1473 259585 0.56 261058 13 1419 256912 0.55 258331 14 1465 250838 0.58 252303 15 1430 237387 0.60 238817 16 1227 224622 0.54 225849 17 1465 237872 0.61 239337 18 1394 215767 0.64 217161 19 1355 210005 0.64 211360 20 1217 208695 0.58 209912 21 1437 203288 0.70 204725 22 1364 215095 0.63 216459 23 1305 212772 0.61 214077 24 1193 196495 0.60 197688 25 1247 200351 0.62 201598 26 1324 207293 0.63 208617 27 1247 194532 0.64 195779 28 1093 187664 0.58 188757 29 1283 196728 0.65 198011 30 1178 195297 0.60 196475 31 1184 185653 0.63 186837 32 1139 188656 0.60 189795 33 1297 213287 0.60 214584 34 1166 185643 0.62 186809 35 1131 189056 0.59 190187 36 1144 189367 0.60 190511 37 1039 175542 0.59 176581 38 1045 180605 0.58 181650 39 1048 172072 0.61 173120 40 1099 171915 0.64 173014 41 1072 167999 0.63 169071 42 1075 160310 0.67 161385 43 937 162894 0.57 163831 44 1046 164116 0.63 165162 45 965 156025 0.61 156990 46 898 156961 0.57 157859 47 976 159457 0.61 160433 48 1028 155130 0.66 156158 49 978 158288 0.61 159266 50 987 153673 0.64 154660 51 878 146069 0.60 146947 52 928 143800 0.64 144728 53 991 159385 0.62 160376 54 928 146814 0.63 147742 55 904 143806 0.62 144710 56 892 146332 0.61 147224 57 947 138621 0.68 139568 58 874 136866 0.63 137740 59 924 140412 0.65 141336 60 917 137055 0.66 137972 61 853 136294 0.62 137147 62 907 137440 0.66 138347 63 943 136306 0.69 137249 64 786 129643 0.60 130429 65 848 131620 0.64 132468 66 745 124654 0.59 125399 67 858 131023 0.65 131881 68 803 128436 0.62 129239 69 794 127991 0.62 128785 70 747 126934 0.59 127681 71 790 127500 0.62 128290 72 725 120808 0.60 121533 73 746 118941 0.62 119687 74 806 123094 0.65 123900 75 733 118770 0.61 119503 76 640 113500 0.56 114140 77 708 117510 0.60 118218 78 675 112004 0.60 112679 79 710 112537 0.63 113247 80 691 110060 0.62 110751 81 653 105895 0.61 106548 82 624 105212 0.59 105836 83 698 106357 0.65 107055 84 649 103880 0.62 104529 85 658 109867 0.60 110525 86 685 102972 0.66 103657 87 646 102368 0.63 103014 88 641 98751 0.64 99392 89 664 102323 0.64 102987 90 701 100653 0.69 101354 91 634 102110 0.62 102744 92 613 98518 0.62 99131 93 603 95249 0.63 95852 94 595 93625 0.63 94220 95 641 96041 0.66 96682 96 601 91857 0.65 92458 97 572 90705 0.63 91277 98 468 88382 0.53 88850 99 394 0 100.00 394 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 55510 301496 15.55 357006 2 44816 250921 15.15 295737 3 45706 260466 14.93 306172 4 45705 254175 15.24 299880 5 4606 484457 0.94 489063 6 4414 671174 0.65 675588 7 5244 908017 0.57 913261 8 5544 899648 0.61 905192 9 5653 846387 0.66 852040 10 5549 870194 0.63 875743 11 5492 851425 0.64 856917 12 5658 796776 0.71 802434 13 5415 819318 0.66 824733 14 5535 824359 0.67 829894 15 5575 832731 0.67 838306 16 5286 794890 0.66 800176 17 5469 796349 0.68 801818 18 5614 795103 0.70 800717 19 5096 749411 0.68 754507 20 5341 777819 0.68 783160 21 5174 747252 0.69 752426 22 5056 726782 0.69 731838 23 4819 713691 0.67 718510 24 4767 691082 0.69 695849 25 4941 690083 0.71 695024 26 4905 686387 0.71 691292 27 5264 724671 0.72 729935 28 4811 695701 0.69 700512 29 4716 680930 0.69 685646 30 4868 667798 0.72 672666 31 4467 661063 0.67 665530 32 4492 647399 0.69 651891 33 4523 637307 0.70 641830 34 4482 631642 0.70 636124 35 4875 650283 0.74 655158 36 4587 639279 0.71 643866 37 4474 635873 0.70 640347 38 4607 658342 0.69 662949 39 4548 613454 0.74 618002 40 4432 636059 0.69 640491 41 4252 609031 0.69 613283 42 4435 618815 0.71 623250 43 4289 593264 0.72 597553 44 4119 590983 0.69 595102 45 4393 594298 0.73 598691 46 4292 598063 0.71 602355 47 4037 585449 0.68 589486 48 4291 575478 0.74 579769 49 4032 580533 0.69 584565 50 4001 573094 0.69 577095 51 4037 563732 0.71 567769 52 3772 540272 0.69 544044 53 3783 537525 0.70 541308 54 3679 527288 0.69 530967 55 3910 538916 0.72 542826 56 3678 524609 0.70 528287 57 3801 536797 0.70 540598 58 3616 520222 0.69 523838 59 3612 505429 0.71 509041 60 3755 518560 0.72 522315 61 3398 499107 0.68 502505 62 3588 496252 0.72 499840 63 3412 492713 0.69 496125 64 3184 481659 0.66 484843 65 3159 483138 0.65 486297 66 3318 470266 0.70 473584 67 3155 469169 0.67 472324 68 3400 480559 0.70 483959 69 3351 467656 0.71 471007 70 3085 454633 0.67 457718 71 3241 452583 0.71 455824 72 3177 447239 0.71 450416 73 3078 445393 0.69 448471 74 3087 444273 0.69 447360 75 3053 440957 0.69 444010 76 2859 426870 0.67 429729 77 2919 423851 0.68 426770 78 2951 425150 0.69 428101 79 2967 428017 0.69 430984 80 2921 415749 0.70 418670 81 2926 412811 0.70 415737 82 2899 407370 0.71 410269 83 2739 405078 0.67 407817 84 2966 401908 0.73 404874 85 2720 397559 0.68 400279 86 2779 395333 0.70 398112 87 2755 390166 0.70 392921 88 2666 379788 0.70 382454 89 2676 378172 0.70 380848 90 2672 375355 0.71 378027 91 2591 374801 0.69 377392 92 2514 368519 0.68 371033 93 2497 366316 0.68 368813 94 2443 361386 0.67 363829 95 2481 356975 0.69 359456 96 2368 349794 0.67 352162 97 2278 346690 0.65 348968 98 1970 330941 0.59 332911 99 1482 0 100.00 1482